View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313_high_16 (Length: 251)

Name: NF1313_high_16

Description: NF1313

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1313_high_16

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 239; E-Value: 1e-132

Query Start/End: Original strand, 9 - 251

Target Start/End: Original strand, 13005977 - 13006219

Alignment:

Q	9	caagaatattaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatttccacaggttgcagttacaccaca	108	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13005977	caagaattttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatttccacaggttgcagttacaccaca	13006076	T

Q	109	tctctttcagtctttctaaatgccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgcaaccacaatgttttttctgatggc	208	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13006077	tctctttcagtctttctaaatgccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgcaaccacaatgttttttctgatggc	13006176	T

Q	209	ttgtttttcagtgtggataacaagaattaatggatatcagttc	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13006177	ttgtttttcagtgtggataacaagaattaatggatatcagttc	13006219	T

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Target: chr8; HSP #2

Raw Score: 57; E-Value: 7e-24

Query Start/End: Original strand, 17 - 251

Target Start/End: Complemental strand, 13121413 - 13121150

Alignment:

Q	17	ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataa-----tatttcca------caggttgcagttacacc	105	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|
T	13121413	ttaaggttgttagactaaatgcttggcattgcaattgcattgactggtagttggctatggataagataatattatcaatttagcatgttacagttacacc	13121314	T

Q	106	acatctctttcagtctttctaaat-gccactctctaaaccacatctttcaaactaatggattatgctttgaggagtttgc-----------------aac	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\| \|\|\|\|\| \| \| \|\|\| \| \|\|\|
T	13121313	acatctctttcagtctttctcaattgccattctctaaacgacatatttcaatcaaatgggttatcctttgcgaaattttctacggaaaatgaattccaac	13121214	T

Q	188	cacaatgttttttctgatggcttgtttttcagtgtggataacaagaattaatggatatcagttc	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	13121213	cacaatgttttttctgatagcttggttttcagtgtggataacaagaattaatgtatatccgttc	13121150	T

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Target: chr8; HSP #3

Raw Score: 48; E-Value: 2e-18

Query Start/End: Original strand, 17 - 84

Target Start/End: Original strand, 13005218 - 13005285

Alignment:

Q	17	ttaaggttgttagactaagttctttgcaatgcatttgcattgactggtagttggctatggataatatt	84	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	13005218	ttaaggtagttagactaagtactttgcactgcagttgcattgactggtagttgggtatggataatatt	13005285	T

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Target: chr8; HSP #4

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 108 - 168

Target Start/End: Complemental strand, 13111594 - 13111531

Alignment:

Q	108	atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat	168	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	13111594	atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat	13111531	T

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Target: chr8; HSP #5

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 108 - 168

Target Start/End: Original strand, 18671585 - 18671648

Alignment:

Q	108	atctctttcagtctttct-aaatgccactctctaa--accacatctttcaaactaatggattat	168	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	18671585	atctctttcaatctttctcaaatgccattctctaattacaacatctttcaatctaatggattat	18671648	T

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