View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313_high_17 (Length: 250)

Name: NF1313_high_17
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313_high_17
NF1313_high_17
[»] chr6 (3 HSPs)
chr6 (1-222)||(6677480-6677701)
chr6 (40-72)||(739700-739732)
chr6 (40-72)||(9163784-9163816)
[»] chr5 (3 HSPs)
chr5 (74-222)||(36851334-36851482)
chr5 (1-74)||(36851236-36851309)
chr5 (39-72)||(631492-631525)
[»] chr3 (3 HSPs)
chr3 (39-72)||(14794295-14794328)
chr3 (39-72)||(2990983-2991016)
chr3 (40-73)||(20230507-20230540)
[»] chr7 (2 HSPs)
chr7 (39-72)||(2219526-2219559)
chr7 (43-72)||(5260421-5260450)
[»] chr4 (4 HSPs)
chr4 (39-72)||(34581606-34581639)
chr4 (40-72)||(4762552-4762584)
chr4 (40-72)||(19237632-19237664)
chr4 (40-72)||(26275541-26275573)
[»] chr2 (3 HSPs)
chr2 (39-72)||(39597604-39597637)
chr2 (39-71)||(29324185-29324217)
chr2 (40-72)||(36300410-36300442)
[»] chr1 (2 HSPs)
chr1 (44-72)||(17473170-17473198)
chr1 (40-72)||(25634569-25634601)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6677701 - 6677480
Alignment:
Q  1 ctagcggcactttatcgtagcaaaatttagacaaaccagatacgctatttagtacaaaatattgtcaaatagatattgcactgtggaatttcaacaattc 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  6677701 ctagcggcactttaacgtagcaaaatttagacaaaccagatacgctatttagtacaaaatattgtgtaatagatattgcactgtggaatttcaacaattc 6677602  T
Q  101 ggtactgtcaattgcggatcacggataaatagaaattaaagggttattcaaattccactacgcgccgcagtagccacaaaattcacaatgttttcaaaga 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6677601 ggtaccgtcaattgcggatcacggataaatagaaattaaagggttattcaaattccactacgcgccgcagtagccacaaaattcacaatgttttcaaaga 6677502  T
Q  201 ttcttggaaccattcattaatt 222  Q
    ||||||||||||||||||||||    
T  6677501 ttcttggaaccattcattaatt 6677480  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 739700 - 739732
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||| |||||||||||||||||||||||    
T  739700 atacgctatatagtacaaaatattgtcaaatag 739732  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 9163784 - 9163816
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||| |||||||||||    
T  9163784 atacgctatttagtacaaaatgttgtcaaatag 9163816  T

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Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 36851334 - 36851482
Alignment:
Q  74 tattgcactgtggaatttcaacaattcggtactgtcaattgcggatcacggataaatagaaattaaagggttattcaaattccactacgcgccgcagtag 173  Q
    |||||||| ||||||||||||||| |||||  ||||||| |||||||| ||||||||||||||||||| ||||||| |||||| || |||| ||||||||    
T  36851334 tattgcaccgtggaatttcaacaaatcggtgttgtcaatcgcggatcatggataaatagaaattaaagcgttattcgaattccgctgcgcgtcgcagtag 36851433  T
Q  174 ccacaaaattcacaatgttttcaaagattcttggaaccattcattaatt 222  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||    
T  36851434 ccgcaaaattcgcaatcttttcaaagattcttggaaccattcattaatt 36851482  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36851236 - 36851309
Alignment:
Q  1 ctagcggcactttatcgtagcaaaatttagacaaaccagatacgctatttagtacaaaatattgtcaaatagat 74  Q
    ||||||||||| |||||||||| |||||||||||||   |||||||||| ||||||||||||||||||||||||    
T  36851236 ctagcggcactatatcgtagcagaatttagacaaactgcatacgctattcagtacaaaatattgtcaaatagat 36851309  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 631525 - 631492
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||||||||||| ||||    
T  631525 gatacgctatttagtacaaaatattgtcatatag 631492  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 14794328 - 14794295
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||||||||||||||||    
T  14794328 gatacgctatttagtacaaaatattgtcaaatag 14794295  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 2991016 - 2990983
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaatag 72  Q
    |||||||||||||||||||||| |||||||||||    
T  2991016 gatacgctatttagtacaaaatgttgtcaaatag 2990983  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 20230507 - 20230540
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaataga 73  Q
    |||||||||||||||||||||||||| |||||||    
T  20230507 atacgctatttagtacaaaatattgtaaaataga 20230540  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 2219559 - 2219526
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaatag 72  Q
    |||| |||||||||||||||||||||||||||||    
T  2219559 gatatgctatttagtacaaaatattgtcaaatag 2219526  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 5260421 - 5260450
Alignment:
Q  43 cgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||||||||||||    
T  5260421 cgctatttagtacaaaatattgtcaaatag 5260450  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 34581606 - 34581639
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaatag 72  Q
    |||||||||||||||||||||| |||||||||||    
T  34581606 gatacgctatttagtacaaaatgttgtcaaatag 34581639  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 4762584 - 4762552
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||| |||||||||||    
T  4762584 atacgctatttagtacaaaatgttgtcaaatag 4762552  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 19237664 - 19237632
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    |||| ||||||||||||||||||||||||||||    
T  19237664 ataccctatttagtacaaaatattgtcaaatag 19237632  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 26275573 - 26275541
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    |||||||||||||||||||||||||| ||||||    
T  26275573 atacgctatttagtacaaaatattgtgaaatag 26275541  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 39597604 - 39597637
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||||||||| ||||||    
T  39597604 gatacgctatttagtacaaaatattgtgaaatag 39597637  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 29324185 - 29324217
Alignment:
Q  39 gatacgctatttagtacaaaatattgtcaaata 71  Q
    ||||| |||||||||||||||||||||||||||    
T  29324185 gatacactatttagtacaaaatattgtcaaata 29324217  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 36300410 - 36300442
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    ||||||||||||||||||||| |||||||||||    
T  36300410 atacgctatttagtacaaaatgttgtcaaatag 36300442  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 17473170 - 17473198
Alignment:
Q  44 gctatttagtacaaaatattgtcaaatag 72  Q
    |||||||||||||||||||||||||||||    
T  17473170 gctatttagtacaaaatattgtcaaatag 17473198  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 25634601 - 25634569
Alignment:
Q  40 atacgctatttagtacaaaatattgtcaaatag 72  Q
    |||| ||||||||||||||||||||||||||||    
T  25634601 ataccctatttagtacaaaatattgtcaaatag 25634569  T

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