View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_high_2 (Length: 549)
Name: NF1313_high_2
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 93 - 532
Target Start/End: Complemental strand, 6994901 - 6994462
Alignment:
| Q |
93 |
agatacaacaatataggtagagagaggtaggagcaggaaaaatacgtgtacaataaaagttggaacctccatcataaacgtcacgttctggtagttaaaa |
192 |
Q |
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| T |
6994901 |
agatacaacaatataggtagagagaggtaggagcaggaaaaatacgtgtacaataaaagttggaacctccatcataaacgtcacgttctggtagttaaaa |
6994802 |
T |
|
| Q |
193 |
ttggttatcaattgaagttaggattgaatattagtatattttttctagagaagaatacgattgaatattatggggatacacggtttatacgcacattaat |
292 |
Q |
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| T |
6994801 |
ttggttatcaattgaagttaggattgaatattagtatattttttctagagaagaatacgattgaatattatggggatacacggtttatacgcacattaat |
6994702 |
T |
|
| Q |
293 |
taatcaaagaagatattatcaactcaacagacgaaattttgtacggtcaaattcacacaagtattttccaacataaaaactaaatagcattttggaccaa |
392 |
Q |
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| T |
6994701 |
taatcaaagaagatattatcaactcaacagacgaaattttgtacggtcaaattcacacaagtattttccaacataaaaactaaatagcattttggaccaa |
6994602 |
T |
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| Q |
393 |
actaatggtggcattatgtaactttcctatgtatgaatatatgaaatcatgaatgctttttaataacaataacatcttaaaattgatttctcctttgaaa |
492 |
Q |
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| T |
6994601 |
actaatggtggcattatataactttcctatgtatgaatatatgaaagcatgagtgctttttaataacaataacatcttaaaattgatttctcctttgaaa |
6994502 |
T |
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| Q |
493 |
attctacgtgttaagacacaagtggatactgtcacacctc |
532 |
Q |
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| T |
6994501 |
attctacgtgttaagacacaagtggatactgtcacacctc |
6994462 |
T |
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