View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_high_5 (Length: 411)
Name: NF1313_high_5
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 35409988 - 35410282
Alignment:
| Q |
1 |
ggtcctgaccaacttctctatactagtccatatgaggagtccatcagccgcataaggataatcttcaataagtagtctaatgccatgtggctgagtggca |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35409988 |
ggtcctgaccaacttctctatactagaccatatgaggagtccatcagccgcataaggataatcttcaataagtagtctaatgccatgtggccgagtggca |
35410087 |
T |
|
| Q |
101 |
tctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410088 |
tctggaaccgccaaacctctgaaaaaaa-gaaagaataaatagttagatcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaa |
35410186 |
T |
|
| Q |
201 |
gctcattgcacagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggcaggaagaccttccatgtcaaatcgccaccaatct |
296 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35410187 |
gctcattgagcagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggcaggaagaccttccatgtcaaaccgccaccaatct |
35410282 |
T |
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