View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_12 (Length: 395)
Name: NF1313_low_12
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 41314252 - 41313884
Alignment:
| Q |
17 |
ttcctggaatgttattgagtgaagagtttgaacaaaaattaagaagttttaactttggtggtgtagttgacatgcttgatgagaaaacaccattggctta |
116 |
Q |
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| T |
41314252 |
ttcctggaatgttattgagtgaagagtttgaacaaaaattaagaagttttaactttggtggtgtagttgacatgcttgatgagaaaacaccattggctta |
41314153 |
T |
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| Q |
117 |
cactcatgtggtatctgagctacgtgtggatacgaagatgtctccatttttgaagccggatgctgacatggcatgttgtcatgacttggaagcttaccta |
216 |
Q |
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| T |
41314152 |
cactcatgtgggatctgagctacgtgtggatacgaagatgtctccatttttgaagccggatgctgacatggcatgttgtcatgacttggaagcttaccta |
41314053 |
T |
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| Q |
217 |
catttagtggatggttttttggcttcaaattgtccttttagagccaatgctaagagaagcttggctaggttaatgcaggatcaaagttctaatgtaaaga |
316 |
Q |
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| T |
41314052 |
catttagtggatggttttttggcttcaaattgtccttttagagccaatgctaagagaagcttggctaggttaatgcaggatcaaagttctaatgtaaaga |
41313953 |
T |
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| Q |
317 |
aattgtatactagtaaggctaaatcaatgagtgtcaatattgaaagacaaagatctttttcagtctctg |
385 |
Q |
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| T |
41313952 |
aattgtatactagtaaggctaaatcaatgagtgtcaatattgaaagacaaagatctttttcagtctctg |
41313884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 339
Target Start/End: Original strand, 4167605 - 4167807
Alignment:
| Q |
137 |
tacgtgtggatacgaagatgtctccatttttgaagccggatgctgacatggcatgttgtcatgacttggaagcttacctacatttagtggatggtttttt |
236 |
Q |
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| T |
4167605 |
tacgtgttaatactaagatgtcaccatacttgaagcccgatgctgacatagcttgttgtcatgatctagaggcttatttacatttagtggatgggtatat |
4167704 |
T |
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| Q |
237 |
ggcttcaaattgtccttttagagccaatgctaagagaagcttggctaggttaatgcaggatcaaagttctaatgtaaagaaattgtatactagtaaggct |
336 |
Q |
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||| || |||||||| |||||||| |||||||||||||| || ||||| |||||||| ||||||||| |||||||||| || |||||||||||||||||| |
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| T |
4167705 |
ggcatctaattgtccatttagagctaatgctaagagaagtttagctagattaatgcaagatcaaagtgctaatgtaaaaaagttgtatactagtaaggct |
4167804 |
T |
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| Q |
337 |
aaa |
339 |
Q |
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||| |
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| T |
4167805 |
aaa |
4167807 |
T |
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