View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_13 (Length: 379)
Name: NF1313_low_13
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 1214318 - 1214020
Alignment:
| Q |
10 |
aagaatatccaagtcattactcaagtacagctttaatgtctacaatgggagcaatacaagccactgcttttggtctttgtgttgaaagagattggagcca |
109 |
Q |
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| T |
1214318 |
aagaatatccaagtcattactcaagtacagctttaatgtctacaatgggagcaatacaagccactgcttttggtctttgtgttgaaagagattggagcca |
1214219 |
T |
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| Q |
110 |
atggaagttgggttggaatatcaggctactagccgttgcttactcggtatatatactcttctttatttaaatcaacagttgaaaattctatataaatttc |
209 |
Q |
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| T |
1214218 |
atggaagttgggttggaatatcaggctactagccgttgcttactcggtatatatactcttctttatttaaatcaacagttgaaaattctatataaatttc |
1214119 |
T |
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| Q |
210 |
atgtatgaattgataatattgatttgatgtttgattttaatattgtagggggttgttgcctcaggattagtggttattgtgacttcgtggtgcataaag |
308 |
Q |
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| T |
1214118 |
atgtatgaattgataatattgatttgatgtttgattttaatattgtagggggttgttgcctctggattagtggttattgtgacttcgtggtgcataaag |
1214020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 1225540 - 1225428
Alignment:
| Q |
24 |
cattactcaagtacagctttaatgtctacaatgggagcaatacaagccactgcttttggtctttgtgttgaaagagattggagccaatggaagttgggtt |
123 |
Q |
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||||| ||||||||||| || |||||| |||||| ||||| ||||| ||| ||||| ||||||||||| | |||| ||||||||||| |||||||| |
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| T |
1225540 |
cattattcaagtacagcattgatgtctttaatgggggcaattcaagcaactctttttgccctttgtgttgagaaggatttgagccaatggaggttgggtt |
1225441 |
T |
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| Q |
124 |
ggaatatcaggct |
136 |
Q |
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| T |
1225440 |
tgagtatcaggct |
1225428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 37792167 - 37792290
Alignment:
| Q |
10 |
aagaatatccaagtcattactcaagtacagctttaatgtctacaatgggagcaatacaagccactgcttttggtctttgtgttgaaagagattggagcca |
109 |
Q |
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||||||||||||| ||| ||||||| || ||||| ||||| |||||||||||||| ||||||| | ||||| | ||||||| || ||||||| || ||| |
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| T |
37792167 |
aagaatatccaagccatcactcaagcactgctttgatgtcgacaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgaccca |
37792266 |
T |
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| Q |
110 |
atggaagttgggttggaatatcag |
133 |
Q |
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||||||| | |||| |||||||| |
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| T |
37792267 |
atggaagcttggttacaatatcag |
37792290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 37801859 - 37801982
Alignment:
| Q |
10 |
aagaatatccaagtcattactcaagtacagctttaatgtctacaatgggagcaatacaagccactgcttttggtctttgtgttgaaagagattggagcca |
109 |
Q |
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||||||||||||| ||| ||||||| || ||||| ||||| |||||||||||||| ||||||| | ||||| | ||||||| || ||||||| || ||| |
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| T |
37801859 |
aagaatatccaagccatcactcaagcactgctttgatgtcgacaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagatttgaccca |
37801958 |
T |
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| Q |
110 |
atggaagttgggttggaatatcag |
133 |
Q |
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||||||| | |||| |||||||| |
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| T |
37801959 |
atggaagcttggttacaatatcag |
37801982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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