View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_16 (Length: 350)
Name: NF1313_low_16
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 45201173 - 45200864
Alignment:
| Q |
12 |
atgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagataatta |
111 |
Q |
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| T |
45201173 |
atgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagataatta |
45201074 |
T |
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| Q |
112 |
agaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagtttaag |
211 |
Q |
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| T |
45201073 |
agaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagtttaag |
45200974 |
T |
|
| Q |
212 |
tgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaaga |
311 |
Q |
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| T |
45200973 |
tgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaaga |
45200874 |
T |
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| Q |
312 |
atgttgaaca |
321 |
Q |
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|||||||||| |
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| T |
45200873 |
atgttgaaca |
45200864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 7772932 - 7773230
Alignment:
| Q |
12 |
atgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaagaagttgcatttgctgagataatta |
111 |
Q |
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| T |
7772932 |
atgaagaggaggaacctaggtgaagagtagc-aagtgtttcaacaaagttgaaggccaaaaacaccatacaaaaagaagttgaattcgctgagataatcc |
7773030 |
T |
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| Q |
112 |
agaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaagatggtttattgtgattgagtttaag |
211 |
Q |
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| T |
7773031 |
atttacagatgcagatataggtatgaaagagtggcttgtaaagtgcttttatcaaagagaatgaaggtgacaaagatggtttattgtgatttagtttaaa |
7773130 |
T |
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| Q |
212 |
tgcatgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaaga |
311 |
Q |
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| T |
7773131 |
agcttgaattatggatgcttttgcaat--gaa-gacattgagtgtgaaaggaagtgaaaagattgaacaagtgattgtttga-aaaacttgaggttaaaa |
7773226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 13580854 - 13580950
Alignment:
| Q |
216 |
tgaattatggatgcttttgcaatcagaaggacagttagtgtgaaaggaagtgaaaagattgaacaagtgattgtttgagaaaccttgaggttaagaa |
312 |
Q |
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| T |
13580854 |
tgaattatgaaagcttttgcaatgaggaaaaaagtgagagtgaaaggaagtgtgaagattgaggaagtgattgtttgagaaactttaaggttaagaa |
13580950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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