View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1313_low_17 (Length: 343)
Name: NF1313_low_17
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 33220559 - 33220246
Alignment:
| Q |
1 |
taagaaatggatacactgaaggagtattgatcaagcaaagcagaaaaaatagctacatccctatacaactacacattaagggcaagacgaagttgtaaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33220559 |
taagaaatggatacactgaacgagtatttatcaagcaaagcagaaaaaatagctacatctctatacaactacacattaagggcaagacgaagttgtaaca |
33220460 |
T |
|
| Q |
101 |
acaatggatattattgttataatccttatcatggtctcaaaaccatagttcattcagaagaagaagaaaacctacacaagagagttctacattgctacaa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33220459 |
ataatggatattattgttataatccttatcatggtctcaaaaccatagttcattcagaagaagaagaaaacctacacaagagagttctacattgctacaa |
33220360 |
T |
|
| Q |
201 |
ggtgtgcaaaactgaaactgcaccttcacaagattcagaaacatgttctttactatggcagagactgtcaaagtcattgtggtcatcatcacctggttcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33220359 |
ggtgtgcaaaactgaaactgcaccttcacaagattcagaaacatgttctttactatggcagagactgtcaaagtcattgtggtcatcatcgcctggttcg |
33220260 |
T |
|
| Q |
301 |
acagccataccatc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33220259 |
acagccataccatc |
33220246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University