View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313_low_18 (Length: 337)

Name: NF1313_low_18
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313_low_18
NF1313_low_18
[»] chr8 (5 HSPs)
chr8 (86-241)||(11828099-11828254)
chr8 (86-172)||(23097378-23097464)
chr8 (154-241)||(1493714-1493801)
chr8 (194-241)||(23097360-23097407)
chr8 (177-222)||(23097301-23097346)
[»] chr7 (1 HSPs)
chr7 (175-219)||(47344075-47344119)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 11828254 - 11828099
Alignment:
Q  86 tccttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgccgagttcttcgtctt 185  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||    
T  11828254 tccttagcagcaccatctggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcg------tcttcgtctt 11828161  T
Q  186 cgtcttcatcgtcc---aggagttattc---agctccatcgccgccgagtccagagttttct 241  Q
    ||||||||| ||||   |||||||||||   || ||||||||| ||||||||||||||||||    
T  11828160 cgtcttcatggtccaggaggagttattccagagttccatcgccaccgagtccagagttttct 11828099  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 23097464 - 23097378
Alignment:
Q  86 tccttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgccg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23097464 tccttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgccg 23097378  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 1493714 - 1493801
Alignment:
Q  154 ttattcggctccatcgccgagttcttcgtcttcgtcttcatcgtccaggagttattcagctccatcgccgccgagtccagagttttct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  1493714 ttattcggctccatcgccgagttcttcgtcttcgtcttcatcgtcctggagttattcggttccatcgccgccgagtccagagttttct 1493801  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 23097407 - 23097360
Alignment:
Q  194 tcgtccaggagttattcagctccatcgccgccgagtccagagttttct 241  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23097407 tcgtccaggagttattcggctccatcgccgccgagtccagagttttct 23097360  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 23097346 - 23097301
Alignment:
Q  177 cttcgtcttcgtcttcatcgtccaggagttattcagctccatcgcc 222  Q
    ||||||||||||||||||||||| |||||||||| | |||||||||    
T  23097346 cttcgtcttcgtcttcatcgtcctggagttattcggttccatcgcc 23097301  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 47344075 - 47344119
Alignment:
Q  175 ttcttcgtcttcgtcttcatcgtccaggagttattcagctccatc 219  Q
    |||||||||||| ||||||||||| ||||||||||| | ||||||    
T  47344075 ttcttcgtcttcctcttcatcgtctaggagttattcggttccatc 47344119  T

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