View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_20 (Length: 326)
Name: NF1313_low_20
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 97 - 295
Target Start/End: Complemental strand, 12622051 - 12621853
Alignment:
| Q |
97 |
agctccttcatccatattgcgatatcttctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagct |
196 |
Q |
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| T |
12622051 |
agctccttcatccatattgcgatatcttctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagct |
12621952 |
T |
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| Q |
197 |
gacccttgctattctcagcttgaactttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcatattctt |
295 |
Q |
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| T |
12621951 |
gacccttgctattctcagcttgaactttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttctt |
12621853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 12627892 - 12627739
Alignment:
| Q |
134 |
gctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaactttat |
233 |
Q |
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| T |
12627892 |
gctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcaccctcactattctcaatttcaaccttcaactttat |
12627793 |
T |
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| Q |
234 |
aatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
287 |
Q |
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| T |
12627792 |
agtttcttgttttgaaagttgaagtttaaaattggaaattcttagctcttcctc |
12627739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 42819324 - 42819167
Alignment:
| Q |
130 |
gaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaact |
229 |
Q |
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| T |
42819324 |
gaaacctccttttgtttatgcatctcgtcctctttcagcttcaattcttcacacacattatcaaactgacccttgctgttctcaacttgaaccttcaagt |
42819225 |
T |
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| Q |
230 |
ttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
287 |
Q |
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| T |
42819224 |
tgataacctctttttccgaaagttgaagctttaaattggtaactcttagctcttcctc |
42819167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 124 - 287
Target Start/End: Complemental strand, 42843251 - 42843088
Alignment:
| Q |
124 |
tctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactt |
223 |
Q |
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|||| ||||||| ||||||||| ||||| ||| | || |||||||||||||| |||| | | ||||| | |||||| ||| ||||| ||||||| | |
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| T |
42843251 |
tcttccgaaagcactttttgtttatgcaactccttctctttcagcttcaattcctcacataaatcatcaaacagaccctcactactctcaacttgaacct |
42843152 |
T |
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| Q |
224 |
tcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
287 |
Q |
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||||||||||| |||||| ||||||||||||||| || ||||| | ||| |||||||||||||| |
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| T |
42843151 |
tcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctc |
42843088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 42834519 - 42834363
Alignment:
| Q |
131 |
aaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaactt |
230 |
Q |
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||||||||||||||| || ||||| ||| || || ||||||||||| | ||| ||||| || ||||||| | |||| || |||| || |||||||| |
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| T |
42834519 |
aaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactt |
42834420 |
T |
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| Q |
231 |
tataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
287 |
Q |
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|||| |||||| ||| ||||| |||| || |||| | ||| |||||||||||||| |
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| T |
42834419 |
tatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctc |
42834363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 30924743 - 30924807
Alignment:
| Q |
223 |
ttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
287 |
Q |
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|||||||| |||||||||| ||| ||||||| |||||| ||||| ||||||| |||||||||||| |
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| T |
30924743 |
ttcaacttgataatctcttcttctgaaagcttaagtttcaaattggaaactcgtagctcttcctc |
30924807 |
T |
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