View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_22 (Length: 315)
Name: NF1313_low_22
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 34076665 - 34076774
Alignment:
| Q |
15 |
tcaagctccttctctaacctaatcctcttctcaacctccttcttcgcccatattgcctccaactccaattccctctccccacaacaacactcgccttttc |
114 |
Q |
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| T |
34076665 |
tcaagctccttctctaacctaaccctcttctcaacctccttcttcacccatattgcctccaactccaattccctctccccacaacaacactcgccttttc |
34076764 |
T |
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| Q |
115 |
cacttgaaaa |
124 |
Q |
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|||||||||| |
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| T |
34076765 |
cacttgaaaa |
34076774 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 34076863 - 34076947
Alignment:
| Q |
213 |
aatttcaaaaccttaactcccaatctcttcaattcttcttcactaacatctccatcgccgtcatcgtcctcatcaccatcagaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
34076863 |
aatttcaaaaccttaactcccaatctcttcaattcttcttcactaacatctccatcgcagtcatggtcctcatcaccatcagaat |
34076947 |
T |
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