View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_23 (Length: 315)
Name: NF1313_low_23
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 45201417 - 45201109
Alignment:
| Q |
7 |
tccaacaatatgatattcccttacaattctgaagtgaaacaaggcctcaatagcagccaaggcaatattaacaggaagtgctaagaacaaagccattgat |
106 |
Q |
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| T |
45201417 |
tccaacaatatgatattcccttacaattctgaagtgaaacaaggcctcaatagcagccaaggcaatattaacaggaagtgctaagaacaaagccattgat |
45201318 |
T |
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| Q |
107 |
gtctttccccttatcaagatacaagctttaagaatcgccgagtatccaccatgtccttccataccagatagaacaagtgacatattgcatatcacaagtg |
206 |
Q |
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| T |
45201317 |
gtctttccccttatcaagatacaagctttaagaatcgccgagtatccaccatgtccttccataccagatagaacaagtgacatattgcatatcacaagtg |
45201218 |
T |
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| Q |
207 |
cattggcaagaatcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagc |
306 |
Q |
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| T |
45201217 |
cattggcaagaatcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagc |
45201118 |
T |
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| Q |
307 |
caaaaacat |
315 |
Q |
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| T |
45201117 |
caaaaacat |
45201109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 7772855 - 7772994
Alignment:
| Q |
173 |
gatagaacaagtgacatattgcatatcacaagtgcattggcaagaatcacagaaaaaagaattgccccggtcgctgacatgaagaggaggaaactaggtg |
272 |
Q |
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| T |
7772855 |
gatagaccaagtgacatattgcatatcaca-gtgcattggcaataatcacagcaaaaagaactgccctggttgctgacatgaagaggaggaacctaggtg |
7772953 |
T |
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| Q |
273 |
aagagtagccaagtgtttcaacaaagctgaaagccaaaaaca |
314 |
Q |
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| T |
7772954 |
aagagtag-caagtgtttcaacaaagttgaaggccaaaaaca |
7772994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 13580458 - 13580536
Alignment:
| Q |
41 |
tgaaacaaggcctcaatagcagccaaggcaatattaacaggaagtgctaagaacaaagccattgatgtctttcccctta |
119 |
Q |
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| T |
13580458 |
tgaaacaaagcttcaatggcagccaaacctacattaacaggaagtgccaagaacaaagccatcgatgtccgtcccctta |
13580536 |
T |
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