View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_24 (Length: 313)
Name: NF1313_low_24
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 14174517 - 14174792
Alignment:
| Q |
11 |
cagagagttcagattcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgacccaa |
110 |
Q |
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| T |
14174517 |
cagagagttcagattcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgacctaa |
14174616 |
T |
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| Q |
111 |
tattgtgataacactcttctcatcagtcccccatcctacacaattcaaaatcatggattataaccaagattcacatacacgatttggaccgcagcatcaa |
210 |
Q |
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| T |
14174617 |
tattgtgataacactcttctcatcagtcccccatcctacacaattcaaaatcatggattataaccaagattcacatacacgatttggaccgcagcatcaa |
14174716 |
T |
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| Q |
211 |
tattttttgtgtcagggccac-aatgttaccatgtgttcgtagcaatatcaaagaacacaacgcaaccacaattgt |
285 |
Q |
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| T |
14174717 |
tattttttgtgtcatggccacaaatgttaccatgtgttcgtagcaatatcaaagaacgcaatgcaaccacaattgt |
14174792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 14153075 - 14153173
Alignment:
| Q |
11 |
cagagagttcagattcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgaccca |
109 |
Q |
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| T |
14153075 |
cagagagttcagattcaaggcgtttgatgagatcctcttgataaatgtcctgataagcttgtctaatttgttgcctttgaacagcatttctctgaccca |
14153173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 14167689 - 14167776
Alignment:
| Q |
63 |
ataagattttctgatttgttgtctctgataaacatttctatgacccaatattgtgataacactcttctcatcagtcccccatcctaca |
150 |
Q |
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| T |
14167689 |
ataagcttttctgatttgctgtatctgattagagtttctatgaccaagtattgttatcactgtcttctcatcagtaccccatcctaca |
14167776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 5180151 - 5180061
Alignment:
| Q |
25 |
tcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaacatttctatgacccaatattg |
115 |
Q |
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| T |
5180151 |
tcaagacgtttgatgagatcctcttcgaaaagctcctcataagcttttctaatctgttgcctctgatgaacatttctatgacccaaaattg |
5180061 |
T |
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