View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313_low_25 (Length: 305)

Name: NF1313_low_25
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313_low_25
NF1313_low_25
[»] chr7 (2 HSPs)
chr7 (203-260)||(37025475-37025532)
chr7 (85-124)||(37025611-37025650)
[»] chr5 (2 HSPs)
chr5 (85-116)||(33861587-33861618)
chr5 (85-117)||(29668373-29668405)
[»] chr1 (1 HSPs)
chr1 (85-123)||(36384400-36384438)
[»] chr2 (1 HSPs)
chr2 (86-123)||(39822978-39823015)
[»] chr8 (1 HSPs)
chr8 (87-123)||(9305314-9305350)
[»] chr3 (1 HSPs)
chr3 (85-113)||(54513995-54514023)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 37025532 - 37025475
Alignment:
Q  203 ttttctccttcttattaatctctctcgtgttacttcatcctccaccatcgtgttcatc 260  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37025532 ttttctctttcttattaatctctctcgtgttacttcatcctccaccatcgtgttcatc 37025475  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 37025650 - 37025611
Alignment:
Q  85 gaactctcacccaacacatcattcttacactcatccaatc 124  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37025650 gaactctcacccaacacatcattcttacactcatccaatc 37025611  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 116
Target Start/End: Original strand, 33861587 - 33861618
Alignment:
Q  85 gaactctcacccaacacatcattcttacactc 116  Q
    ||||||||||||||||||||||||||||||||    
T  33861587 gaactctcacccaacacatcattcttacactc 33861618  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 29668373 - 29668405
Alignment:
Q  85 gaactctcacccaacacatcattcttacactca 117  Q
    ||||||| |||||||||||||||||||||||||    
T  29668373 gaactcttacccaacacatcattcttacactca 29668405  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 36384438 - 36384400
Alignment:
Q  85 gaactctcacccaacacatcattcttacactcatccaat 123  Q
    |||||||||||||||||||||||||||||| || |||||    
T  36384438 gaactctcacccaacacatcattcttacacccaaccaat 36384400  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 39823015 - 39822978
Alignment:
Q  86 aactctcacccaacacatcattcttacactcatccaat 123  Q
    ||||||||||||||||||||||||||||| || |||||    
T  39823015 aactctcacccaacacatcattcttacacccaaccaat 39822978  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 9305350 - 9305314
Alignment:
Q  87 actctcacccaacacatcattcttacactcatccaat 123  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  9305350 actctcacccaacacattattcttacactcaaccaat 9305314  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 54513995 - 54514023
Alignment:
Q  85 gaactctcacccaacacatcattcttaca 113  Q
    |||||||||||||||||||||||||||||    
T  54513995 gaactctcacccaacacatcattcttaca 54514023  T

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