View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_26 (Length: 303)
Name: NF1313_low_26
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 6677738 - 6678019
Alignment:
| Q |
1 |
ttttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaagtgaaatttgaataga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6677738 |
ttttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaagtgaaatttgaataga |
6677837 |
T |
|
| Q |
101 |
ttaaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataatgcatttcagattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6677838 |
ttaaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataatgcatttcagattgg |
6677937 |
T |
|
| Q |
201 |
tatcctttaatttannnnnnnctcgtgttcattgttcactgttcatccaatttctacttaaacatttcttgctcgtccaatttctgttc |
289 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6677938 |
tatcctttaatttatttttttctcg-------tgttcactgttcatccaatttctacttaaacatttcttgctcatccaatttctgttc |
6678019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 3261430 - 3261478
Alignment:
| Q |
150 |
tggtttatggttaatcaatactcgatactttaataatgcatttcagatt |
198 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||| |||| ||||| |
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| T |
3261430 |
tggtctatggttaatcaatactcgatactttaatgatgtattttagatt |
3261478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 36862883 - 36862692
Alignment:
| Q |
3 |
ttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaagtgaaatttgaatagatt |
102 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||| ||| |||| |
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| T |
36862883 |
ttcaaagatttttctttcatgttatgacctaacttttagcattaatgatctaaggtttaagctggttaagttttttttctaagtgaaatttaaattgatt |
36862784 |
T |
|
| Q |
103 |
aaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataatgcatttca |
194 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||| ||||||| |
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| T |
36862783 |
aaaagatgtataatgctgaatggctcataggattgttaacagtaaaatggtctatggttaatcaatactcaatgctttaataatccatttca |
36862692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 36851197 - 36850995
Alignment:
| Q |
3 |
ttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaagtgaaatttgaatagatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| || |||||||||||||||| ||| |||| |
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| T |
36851197 |
ttcaaagattttgctttcatgttatgacctaacttctagcattgatgagctaaggtttaagctggttaagt-ttctttctaagtgaaatttaaattgatt |
36851099 |
T |
|
| Q |
103 |
aaaagatgtatcgtgctgaatggctcataggattgttaacagtaaagtggtttatggttaatcaatactcgatactttaataatgcatttcagattggta |
202 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
36851098 |
aaaagatgtatcatgctgaatggctcttaggattgtt-------aaatggtctatggttaatcaatactcaatactttaataatgcatttcagattagtc |
36851006 |
T |
|
| Q |
203 |
tcctttaattt |
213 |
Q |
| |
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| ||||||||| |
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|
| T |
36851005 |
ttctttaattt |
36850995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 36850984 - 36850940
Alignment:
| Q |
240 |
tgttcatccaatttctacttaaacatttcttgctcgtccaatttc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
36850984 |
tgttcatccaatttctacttaaacatttcttgatcatccaatttc |
36850940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 6165211 - 6165177
Alignment:
| Q |
32 |
taacttttagcattaatgagctgaggtttaagctg |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
6165211 |
taacttttagcattaatgagctgaggtttaagctg |
6165177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 36862661 - 36862615
Alignment:
| Q |
240 |
tgttcatccaatttctacttaaacatttcttgctcgtccaatttctg |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||| || || |||||||| |
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| T |
36862661 |
tgttcatccaatttctacttaaacatttcttgatcatctaatttctg |
36862615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 18133458 - 18133500
Alignment:
| Q |
150 |
tggtttatggttaatcaatactcgatactttaataatgcattt |
192 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||| |
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|
| T |
18133458 |
tggtctatggttaatcaatgctcgatactttaatgatgcattt |
18133500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 46517151 - 46517246
Alignment:
| Q |
3 |
ttcaaagattttgctttcatgttatgacctaacttttagcattaatgagctgaggtttaagctgattaagtgttttttctaagtgaaatttgaatag |
99 |
Q |
| |
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|||||||||||| ||| ||||| ||| | || ||||||||||||| ||| | |||||||| || |||| ||||||||||||| ||||||||||| |
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| T |
46517151 |
ttcaaagattttcttttgatgttttgatcaaatttttagcattaataagccgcggtttaagttggccaagtcttttttctaagtg-aatttgaatag |
46517246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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