View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_27 (Length: 297)
Name: NF1313_low_27
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 76 - 297
Target Start/End: Original strand, 30411735 - 30411951
Alignment:
| Q |
76 |
gtatttgtgtcgagtgttcatttcatttggttctacataaaaaccacaacttgaaagtgatgctttggtaactctttagttttgagaaaaacgcaatgtt |
175 |
Q |
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| T |
30411735 |
gtatttgtgtcgagtgttcatttcatttggttctacataaaaaccacaacttgaaagtgatgctttggtaactcttta-ttttgagaaaaacgctatgtt |
30411833 |
T |
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| Q |
176 |
atttggaattcgactcgtgaaataattataatttgatacataattattgtacctagctaagaattgaatttgtcctttgattcaatttaaatactctctc |
275 |
Q |
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| T |
30411834 |
atttggaattggactcgtgaaataattatagtttgatacataattattgtac----ctaagaattgaatttgtcctttgattcaatttaaatactctctc |
30411929 |
T |
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| Q |
276 |
ccatccttgttataaactagta |
297 |
Q |
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| T |
30411930 |
ccatccttgttataaactagta |
30411951 |
T |
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