View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_28 (Length: 287)
Name: NF1313_low_28
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 7222845 - 7222978
Alignment:
| Q |
52 |
tttttacaagaaaacaaaattatagcactaattcaattaacatcacactaaaggacttaagtctcgattctgacaactttaatttagccatgttttccct |
151 |
Q |
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| T |
7222845 |
ttttcacaagaaaacaaaattatagcactaattcaattaacatcacactaaaggacttaagtctcgattctgacaactttaatttagccatgttttccct |
7222944 |
T |
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| Q |
152 |
tctcttggctttccttgattttgattcttctgtg |
185 |
Q |
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| T |
7222945 |
tctcttggctttccttgattttgattcttctgtg |
7222978 |
T |
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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 34723605 - 34723517
Alignment:
| Q |
186 |
gtgctgtggggagaagggagacagagagaagaagaaacctgcttcattttgtctttcctgcgtccacctgtccactgtctctctggcct |
274 |
Q |
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| T |
34723605 |
gtgctgtggggagaatggagacagagagaagaagaaacctgcttcattttgtctttcctgcgtccacctgtccactgtctctctggcct |
34723517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 11432108 - 11432031
Alignment:
| Q |
108 |
ttaagtctcgattctgacaactttaatttagccatgttttcccttctcttggctttccttgattttgattcttctgtg |
185 |
Q |
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| T |
11432108 |
ttaagtctcgactctggcaactttaatttagccctgttttcccttctcttggctttccttgattttgattcttctgtg |
11432031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 11432304 - 11432258
Alignment:
| Q |
41 |
ggagacaattctttttacaagaaaacaaaattatagcactaattcaa |
87 |
Q |
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| T |
11432304 |
ggagacaattctttttacaagaaaacaaaattataccattaattcaa |
11432258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 11432213 - 11432178
Alignment:
| Q |
71 |
ttatagcactaattcaattaacatcacactaaagga |
106 |
Q |
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| T |
11432213 |
ttataccactaattcaattaacatcacactaaagga |
11432178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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