View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313_low_29 (Length: 275)

Name: NF1313_low_29
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313_low_29
NF1313_low_29
[»] chr8 (26 HSPs)
chr8 (36-275)||(38874632-38874871)
chr8 (43-111)||(10114482-10114550)
chr8 (43-111)||(27028824-27028892)
chr8 (37-114)||(28769345-28769422)
chr8 (56-112)||(35220731-35220787)
chr8 (52-111)||(43717946-43718005)
chr8 (84-206)||(7008633-7008753)
chr8 (37-114)||(11795079-11795156)
chr8 (37-76)||(7514565-7514604)
chr8 (52-111)||(30251463-30251522)
chr8 (37-80)||(35869824-35869867)
chr8 (37-111)||(8062511-8062585)
chr8 (222-268)||(14926893-14926939)
chr8 (60-118)||(21653091-21653149)
chr8 (222-260)||(42215219-42215257)
chr8 (43-111)||(2482858-2482924)
chr8 (221-266)||(9700113-9700158)
chr8 (37-102)||(9956832-9956897)
chr8 (37-114)||(12361179-12361256)
chr8 (41-114)||(30013209-30013282)
chr8 (56-109)||(44236834-44236887)
chr8 (46-142)||(6966881-6966976)
chr8 (38-70)||(31705073-31705105)
chr8 (161-205)||(31884856-31884900)
chr8 (234-270)||(34769427-34769463)
chr8 (222-270)||(35534522-35534570)
[»] chr5 (37 HSPs)
chr5 (37-111)||(39105451-39105525)
chr5 (41-190)||(32172644-32172792)
chr5 (52-111)||(4014433-4014492)
chr5 (37-105)||(28776980-28777048)
chr5 (37-111)||(2568645-2568719)
chr5 (37-111)||(9202757-9202831)
chr5 (37-95)||(12425558-12425616)
chr5 (56-142)||(41052874-41052959)
chr5 (46-111)||(7984965-7985030)
chr5 (221-266)||(9174928-9174973)
chr5 (37-110)||(37588370-37588443)
chr5 (37-97)||(7319393-7319453)
chr5 (43-111)||(41981874-41981942)
chr5 (84-203)||(11297114-11297232)
chr5 (207-254)||(31723903-31723950)
chr5 (147-202)||(36326104-36326159)
chr5 (221-251)||(1899265-1899295)
chr5 (44-86)||(4620187-4620229)
chr5 (37-111)||(6587116-6587190)
chr5 (56-114)||(7319014-7319072)
chr5 (164-202)||(9174929-9174967)
chr5 (57-111)||(10639960-10640014)
chr5 (52-102)||(24030419-24030469)
chr5 (234-272)||(34736434-34736472)
chr5 (221-266)||(8651265-8651310)
chr5 (104-189)||(11457152-11457236)
chr5 (37-78)||(12975334-12975375)
chr5 (163-204)||(16937800-16937841)
chr5 (37-118)||(36796708-36796789)
chr5 (37-110)||(37526209-37526282)
chr5 (43-108)||(40119880-40119945)
chr5 (37-114)||(41957457-41957534)
chr5 (43-111)||(1619083-1619150)
chr5 (161-205)||(6938649-6938693)
chr5 (222-266)||(7705911-7705955)
chr5 (43-91)||(32942611-32942659)
chr5 (52-120)||(42582914-42582982)
[»] chr3 (41 HSPs)
chr3 (56-189)||(37273140-37273272)
chr3 (59-206)||(45541580-45541726)
chr3 (38-202)||(2923466-2923629)
chr3 (127-203)||(25459548-25459624)
chr3 (57-125)||(33972729-33972797)
chr3 (43-110)||(44747418-44747485)
chr3 (44-107)||(50600191-50600254)
chr3 (59-109)||(466202-466252)
chr3 (45-114)||(2719463-2719532)
chr3 (64-205)||(4534291-4534431)
chr3 (37-90)||(33405197-33405250)
chr3 (164-205)||(51929854-51929895)
chr3 (52-108)||(21367669-21367725)
chr3 (37-113)||(34254815-34254891)
chr3 (37-80)||(2201115-2201158)
chr3 (59-114)||(16790384-16790439)
chr3 (52-202)||(41633362-41633509)
chr3 (52-122)||(2128256-2128326)
chr3 (37-95)||(5436246-5436304)
chr3 (45-111)||(28622008-28622074)
chr3 (53-95)||(32582747-32582789)
chr3 (37-111)||(36783343-36783417)
chr3 (222-264)||(50760704-50760746)
chr3 (37-111)||(52618990-52619064)
chr3 (222-259)||(584159-584196)
chr3 (231-260)||(9832674-9832703)
chr3 (37-102)||(14548739-14548804)
chr3 (37-78)||(21865563-21865604)
chr3 (37-113)||(25182994-25183071)
chr3 (43-108)||(30443886-30443951)
chr3 (221-258)||(48364834-48364871)
chr3 (221-258)||(48807811-48807848)
chr3 (164-205)||(53762310-53762351)
chr3 (57-113)||(901931-901987)
chr3 (126-202)||(3775770-3775846)
chr3 (37-97)||(14145899-14145959)
chr3 (43-111)||(20880469-20880537)
chr3 (43-95)||(39602235-39602287)
chr3 (234-266)||(43046789-43046821)
chr3 (148-212)||(43948751-43948815)
chr3 (221-265)||(51929853-51929897)
[»] chr7 (30 HSPs)
chr7 (37-111)||(40688995-40689069)
chr7 (37-107)||(47177623-47177693)
chr7 (52-109)||(20526448-20526505)
chr7 (37-126)||(38010701-38010790)
chr7 (37-111)||(47510116-47510190)
chr7 (37-101)||(6263382-6263446)
chr7 (37-97)||(27548250-27548310)
chr7 (43-102)||(12110353-12110412)
chr7 (161-204)||(24363517-24363560)
chr7 (52-111)||(48470046-48470105)
chr7 (37-166)||(48157075-48157203)
chr7 (208-268)||(23214954-23215014)
chr7 (43-95)||(44821952-44822004)
chr7 (43-110)||(752962-753029)
chr7 (52-95)||(43648242-43648285)
chr7 (43-102)||(45790443-45790502)
chr7 (52-114)||(6601369-6601431)
chr7 (52-110)||(33128755-33128813)
chr7 (38-108)||(39505944-39506014)
chr7 (46-95)||(33678776-33678825)
chr7 (222-267)||(34083520-34083565)
chr7 (43-108)||(46280284-46280349)
chr7 (224-260)||(5010390-5010426)
chr7 (40-72)||(28340892-28340924)
chr7 (37-109)||(30535550-30535622)
chr7 (159-199)||(32410648-32410688)
chr7 (59-111)||(36517588-36517640)
chr7 (234-266)||(40371567-40371599)
chr7 (224-260)||(40598404-40598440)
chr7 (52-92)||(47559629-47559669)
[»] chr2 (47 HSPs)
chr2 (37-111)||(18066115-18066189)
chr2 (37-189)||(15377752-15377903)
chr2 (37-114)||(18179246-18179323)
chr2 (37-126)||(22681179-22681268)
chr2 (37-202)||(11513885-11514047)
chr2 (37-93)||(8017421-8017477)
chr2 (222-269)||(2416426-2416473)
chr2 (147-205)||(15370239-15370297)
chr2 (89-203)||(32821848-32821961)
chr2 (45-98)||(6167305-6167358)
chr2 (38-71)||(29643465-29643498)
chr2 (37-110)||(39983329-39983402)
chr2 (45-102)||(42457943-42458000)
chr2 (52-104)||(26143656-26143708)
chr2 (158-206)||(33503105-33503153)
chr2 (43-111)||(40279190-40279258)
chr2 (56-111)||(3611232-3611287)
chr2 (39-114)||(6993730-6993805)
chr2 (52-111)||(9174817-9174876)
chr2 (225-260)||(9395245-9395280)
chr2 (147-190)||(14302918-14302961)
chr2 (37-72)||(25800816-25800851)
chr2 (43-78)||(33931612-33931647)
chr2 (43-102)||(42621393-42621452)
chr2 (234-268)||(6772444-6772478)
chr2 (161-203)||(10285970-10286012)
chr2 (37-111)||(26626860-26626934)
chr2 (37-111)||(29316784-29316858)
chr2 (56-110)||(33319822-33319876)
chr2 (222-268)||(35378443-35378489)
chr2 (222-260)||(37448696-37448734)
chr2 (52-114)||(40279409-40279471)
chr2 (37-102)||(680490-680555)
chr2 (46-111)||(1893290-1893355)
chr2 (37-110)||(9395117-9395190)
chr2 (43-108)||(12464485-12464550)
chr2 (37-78)||(16353848-16353889)
chr2 (52-109)||(16398116-16398173)
chr2 (59-140)||(34652017-34652097)
chr2 (54-111)||(35378541-35378598)
chr2 (37-98)||(41875675-41875736)
chr2 (43-111)||(750664-750731)
chr2 (37-113)||(938517-938593)
chr2 (221-261)||(3458707-3458747)
chr2 (161-205)||(40759270-40759314)
chr2 (37-69)||(42592326-42592358)
chr2 (165-205)||(42868397-42868437)
[»] chr1 (48 HSPs)
chr1 (36-114)||(4622079-4622157)
chr1 (43-111)||(7137007-7137075)
chr1 (37-111)||(9656637-9656711)
chr1 (38-111)||(28482242-28482315)
chr1 (43-111)||(27820346-27820414)
chr1 (43-111)||(34290229-34290297)
chr1 (52-112)||(35179141-35179201)
chr1 (43-111)||(45975683-45975751)
chr1 (37-204)||(6231733-6231899)
chr1 (38-189)||(31517672-31517822)
chr1 (222-260)||(42556525-42556563)
chr1 (57-111)||(51695504-51695558)
chr1 (52-97)||(4576807-4576852)
chr1 (37-118)||(7218076-7218157)
chr1 (52-109)||(39603842-39603899)
chr1 (147-202)||(12763419-12763475)
chr1 (38-114)||(27963376-27963452)
chr1 (37-114)||(28689458-28689537)
chr1 (42-102)||(38867849-38867909)
chr1 (222-269)||(11695975-11696021)
chr1 (38-109)||(25944420-25944491)
chr1 (59-102)||(38189773-38189816)
chr1 (39-114)||(39270431-39270506)
chr1 (44-114)||(2294905-2294975)
chr1 (126-200)||(4549462-4549536)
chr1 (55-109)||(16144981-16145035)
chr1 (37-111)||(16322836-16322910)
chr1 (224-262)||(28467548-28467586)
chr1 (163-205)||(37631475-37631517)
chr1 (56-110)||(41195203-41195257)
chr1 (37-107)||(49888754-49888824)
chr1 (43-200)||(2777885-2778040)
chr1 (38-111)||(6774976-6775048)
chr1 (59-108)||(7941615-7941664)
chr1 (221-258)||(24279861-24279898)
chr1 (37-78)||(25006076-25006117)
chr1 (41-102)||(27887136-27887197)
chr1 (37-114)||(30371135-30371212)
chr1 (222-258)||(1662686-1662722)
chr1 (163-203)||(11695974-11696014)
chr1 (37-73)||(15361700-15361736)
chr1 (37-205)||(17420190-17420356)
chr1 (43-111)||(24915060-24915128)
chr1 (37-109)||(25005808-25005880)
chr1 (222-254)||(29723602-29723634)
chr1 (43-111)||(42174848-42174916)
chr1 (37-97)||(44422686-44422746)
chr1 (37-73)||(48830123-48830159)
[»] chr6 (27 HSPs)
chr6 (37-114)||(4246397-4246474)
chr6 (52-203)||(8010359-8010509)
chr6 (36-202)||(7148652-7148817)
chr6 (229-266)||(29249513-29249550)
chr6 (135-208)||(31461756-31461829)
chr6 (163-206)||(103542-103585)
chr6 (52-111)||(34430470-34430529)
chr6 (52-102)||(835267-835317)
chr6 (59-189)||(2455819-2455948)
chr6 (37-111)||(24476589-24476663)
chr6 (45-111)||(31624085-31624151)
chr6 (37-102)||(9093574-9093639)
chr6 (89-122)||(27924601-27924634)
chr6 (45-122)||(28641747-28641824)
chr6 (37-102)||(31671092-31671157)
chr6 (163-203)||(835179-835219)
chr6 (43-111)||(2735062-2735130)
chr6 (43-111)||(3201956-3202024)
chr6 (59-143)||(4420652-4420735)
chr6 (222-258)||(5977042-5977078)
chr6 (43-95)||(9109276-9109328)
chr6 (43-79)||(9604842-9604878)
chr6 (161-205)||(12111077-12111121)
chr6 (222-254)||(12111080-12111112)
chr6 (43-107)||(24982698-24982762)
chr6 (222-254)||(31338090-31338122)
chr6 (63-111)||(31813174-31813222)
[»] chr4 (36 HSPs)
chr4 (43-111)||(17822874-17822942)
chr4 (37-201)||(23459615-23459777)
chr4 (43-102)||(42685417-42685476)
chr4 (56-189)||(28615529-28615662)
chr4 (44-99)||(942129-942184)
chr4 (37-126)||(9841053-9841141)
chr4 (43-102)||(16199999-16200058)
chr4 (223-266)||(44638139-44638182)
chr4 (37-110)||(20031736-20031810)
chr4 (37-114)||(2996560-2996637)
chr4 (52-109)||(55302251-55302308)
chr4 (58-102)||(825508-825552)
chr4 (37-201)||(44319936-44320099)
chr4 (234-269)||(10205851-10205886)
chr4 (159-202)||(22796763-22796806)
chr4 (37-80)||(24444025-24444068)
chr4 (134-189)||(25487489-25487544)
chr4 (84-203)||(53315360-53315478)
chr4 (37-111)||(1706609-1706683)
chr4 (37-115)||(27043835-27043913)
chr4 (37-95)||(35571656-35571714)
chr4 (36-74)||(52754586-52754624)
chr4 (37-87)||(53626763-53626813)
chr4 (161-202)||(10172172-10172213)
chr4 (222-251)||(34430626-34430655)
chr4 (37-110)||(36048520-36048593)
chr4 (37-114)||(40174550-40174627)
chr4 (37-102)||(51630098-51630163)
chr4 (52-97)||(52315220-52315265)
chr4 (164-200)||(3637299-3637335)
chr4 (44-112)||(11802528-11802596)
chr4 (37-97)||(29778782-29778842)
chr4 (41-93)||(32421096-32421148)
chr4 (163-203)||(35571549-35571589)
chr4 (37-69)||(36460573-36460605)
chr4 (43-95)||(49202638-49202690)
[»] scaffold0221 (1 HSPs)
scaffold0221 (52-109)||(22233-22290)
[»] scaffold0024 (1 HSPs)
scaffold0024 (52-101)||(21304-21353)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 36 - 275
Target Start/End: Original strand, 38874632 - 38874871
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874632 cttttcatataagctctaagctgttttcataagctattttggagaacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 38874731  T
Q  136 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtctcattggtctttatgctagtaaat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874732 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtctcattggtctttatgctagtaaat 38874831  T
Q  236 aagctcaaataagtcaatctaaacatgccctaattggtta 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38874832 aagctcaaataagtcaatctaaacatgccctaattggtta 38874871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 10114482 - 10114550
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| |||||||||||||| |||||| ||||| |||||||||||||||||| |||| ||| ||||    
T  10114482 tataagctataagctgttttcattagctatattggagaacatatgaaaataagctgaaaacagcatatg 10114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 27028824 - 27028892
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| ||||||||||||||||||||| ||||| | | |||||||||||||| |||||||||||||    
T  27028824 tatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 28769422 - 28769345
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |   |||| ||||||||| |||| | |||||||||    
T  28769422 ttttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatggac 28769345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 35220787 - 35220731
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 112  Q
    |||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||    
T  35220787 ctgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgg 35220731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 43718005 - 43717946
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||| |||||||||| ||||| ||| ||||||| ||||||||||| ||||||||    
T  43718005 taagctgtttgcataagctatcttggagaacttatgaaagtaagctaaaaacagcttatg 43717946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 7008633 - 7008753
Alignment:
Q  84 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctc 183  Q
    ||||||||||||||||||||| |||| |||| ||| ||| | |||||||||||||||||    ||| |||| || | ||||||||| | ||||||| |||    
T  7008633 tatgaaaataagctaaaaatatcttaaggacatgtcata-ggttgtttctataagctctctctaac-gtctcacaagtgcttatgccagtagataaactc 7008730  T
Q  184 aaataaaacaatccaaacaggct 206  Q
    ||||||  |||| ||||||||||    
T  7008731 aaataagtcaattcaaacaggct 7008753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 11795079 - 11795156
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||| | ||||||| |||||||||||||| |||| | | |||| ||||||||| |||| || ||||||||    
T  11795079 ttttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatggac 11795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 7514565 - 7514604
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttg 76  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  7514565 ttttcatataagctacaagctgttttcataagctattttg 7514604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 30251522 - 30251463
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||||||||||| |||||  || ||||||||||||||  ||| ||||||||    
T  30251522 taagctgttttcataagctatcttggaccacttatgaaaataagctgtaaaaagcttatg 30251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 35869824 - 35869867
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggata 80  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  35869824 ttttcatataagctataagttgttttcataagctattgtggata 35869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 8062511 - 8062585
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||| |||| ||||||||||| || || |   ||||||||||||||  ||||||||||||    
T  8062511 ttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaaatagcttatg 8062585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 14926939 - 14926893
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 268  Q
    |||||| |||||||||| ||||||||||||||| ||||| |||||||    
T  14926939 ttatgccagtaaataagttcaaataagtcaatccaaacaagccctaa 14926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 21653091 - 21653149
Alignment:
Q  60 tttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 118  Q
    |||||| |||||| ||||| | | |||||||||||||| ||||||||||||| ||||||    
T  21653091 tttcattagctatcttggagagcttatgaaaataagctgaaaatagcttatgaacgtgt 21653149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 42215257 - 42215219
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaaca 260  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  42215257 ttatgccagtaaataagctcaaataagttaatctaaaca 42215219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 2482858 - 2482924
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||||||||||||||  ||||| ||||||||| |||  ||||||||| |||| ||||||||    
T  2482858 tataagctataagctgttttcat--gctatcttggataacttatagaaataagctgaaaacagcttatg 2482924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 9700113 - 9700158
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 266  Q
    |||||||||||| |||||||||||||||| |||| ||||| |||||    
T  9700113 tttatgctagtagataagctcaaataagttaatccaaacaggccct 9700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 9956897 - 9956832
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||| | |||| ||||||||||| |||| ||||| ||| |||||||||||||| ||||    
T  9956897 ttttcctataagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 12361179 - 12361256
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| ||||||||||||||||| ||||  ||| | |  ||| ||||||| | |||| |||||||||||    
T  12361179 ttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggac 12361256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 30013209 - 30013282
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||| |||||||||||||||||||||  || | |||  ||| ||||||||| ||||||| ||| ||||    
T  30013209 catataagctataagctgttttcataagctatcctgtagaactaatggaaataagctgaaaatagtttagggac 30013282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 44236887 - 44236834
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||||||||||| ||||| | | |||||||||||||| |||||| ||||    
T  44236887 ctgttttcataagctatattggagagcttatgaaaataagctgaaaataactta 44236834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 6966881 - 6966976
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    ||||| |||||||||||||| ||| || ||||  | | |||||||||||||  |||||||||||  ||| ||||||| | ||||||| |||||||||    
T  6966881 aagctataagctgttttcattagccatcttggggagcttatgaaaataagcggaaaatagcttaatgacatgttataag-ttgtttcaataagctct 6966976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 31705073 - 31705105
Alignment:
Q  38 tttcatataagctctaagctgttttcataagct 70  Q
    ||||||||||||| |||||||||||||||||||    
T  31705073 tttcatataagctataagctgttttcataagct 31705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 31884900 - 31884856
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||||| |||||||||||||||||  |||||||| |||||    
T  31884900 tgcttatgctagtagataagctcaaataacgcaatccaagcaggc 31884856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 34769463 - 34769427
Alignment:
Q  234 ataagctcaaataagtcaatctaaacatgccctaatt 270  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  34769463 ataagctcaaatatgtcaatccaaacatgccctaatt 34769427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 35534570 - 35534522
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaatt 270  Q
    ||||| ||||| |||||||||||||||||| |||||||| |||| ||||    
T  35534570 ttatgttagtagataagctcaaataagtcattctaaacaggccccaatt 35534522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 39105451 - 39105525
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  39105451 ttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatg 39105525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 32172644 - 32172792
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagct 140  Q
    |||||||||| |||||||||||||||||||||  || | |||  ||| ||||||||| ||||| |||||||||| ||| ||| | ||||||| |||||||    
T  32172644 catataagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataag-ttgtttccataagct 32172742  T
Q  141 cttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaa 190  Q
    || |  |||  ||| || | ||||||||||| || |||||||||||||||    
T  32172743 ctcccaaactatctcacaagtgcttatgctagtatataagctcaaataaa 32172792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 4014492 - 4014433
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||    
T  4014492 taagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatg 4014433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 28776980 - 28777048
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatag 105  Q
    ||||| |||| ||| ||||||||||||||||||||| ||||| |||  ||||||||||| |||||||||    
T  28776980 ttttcgtataggctataagctgttttcataagctatcttggagaactaatgaaaataagataaaaatag 28777048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 2568645 - 2568719
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||||| |||| ||||||||||||||||  |||| | |  |||||||||||||||||||| ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatg 2568719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 9202831 - 9202757
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||  ||||||||||||||||| ||| ||| | ||| ||||||||||||||  ||| ||||||||    
T  9202831 ttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatg 9202757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 12425558 - 12425616
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||| ||| ||||||||||||    
T  12425558 ttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataag 12425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 41052874 - 41052959
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    |||||||||||| |||||||||| | | |||| ||||||| ||||||||| ||||| || ||| ||| | |||||||||||||||||    
T  41052874 ctgttttcataacctattttggagagcttatggaaataagttaaaaatagtttatgaacatgtcata-ggttgtttctataagctct 41052959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 7984965 - 7985030
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||| |||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  7984965 aagctataagcttttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 7985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 9174928 - 9174973
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 266  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||    
T  9174928 tttatgctaatagataagctcaaataagtcaatccaaacatgccct 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 37588443 - 37588370
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| |||||||||||| |||| |||| | | |||| ||||||||| |||| |||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 7319393 - 7319453
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||||||||||||| ||| |||||||| |||||||| ||||| ||| ||| ||||||||||    
T  7319393 ttttcatataagctataaactgttttcgtaagctatcttggagaacttataaaaataagct 7319453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 41981942 - 41981874
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || |||||||||||||||| ||||||| || ||| || |||||||||||||||  ||||||||    
T  41981942 tataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatg 41981874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 11297232 - 11297114
Alignment:
Q  84 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctc 183  Q
    |||||||||||||| ||||||||| || ||| |||  || ||| ||||| ||||||||||   ||||||||||| | || |||||| | ||||||||||     
T  11297232 tatgaaaataagctgaaaatagctaattgacatgtcttaagtt-gtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagctt 11297134  T
Q  184 aaataaaacaatccaaacag 203  Q
    ||||||  |||| |||||||    
T  11297133 aaataagtcaattcaaacag 11297114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 31723903 - 31723950
Alignment:
Q  207 tagtctcattggtctttatgctagtaaataagctcaaataagtcaatc 254  Q
    |||||||||  || |||||||||||| |||||||||||||||||||||    
T  31723903 tagtctcataagtgtttatgctagtacataagctcaaataagtcaatc 31723950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 36326104 - 36326159
Alignment:
Q  147 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    |||| ||| |||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  36326104 aacaatctcaccagtgcttatgccaatagataagctaaaataagacaatccaaaca 36326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 1899265 - 1899295
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtca 251  Q
    |||||||||||||||||||||||||||||||    
T  1899265 tttatgctagtaaataagctcaaataagtca 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 4620187 - 4620229
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatat 86  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  4620187 ataagctataagctgttttcataagctatgttggagaacatat 4620229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 6587190 - 6587116
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| |||||||| |||| ||||||||||||||||  |||| ||| | ||||||||||||  ||| ||||||||    
T  6587190 ttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatg 6587116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 7319072 - 7319014
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||||||||| ||||| ||| |||||||||||||| | || | |||||||||    
T  7319072 ctgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggac 7319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 9174929 - 9174967
Alignment:
Q  164 ttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  9174929 ttatgctaatagataagctcaaataagtcaatccaaaca 9174967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 10639960 - 10640014
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||| ||| ||||||||    
T  10639960 tgtttacataaactattttggagaacttatgaaaataagctagaaaaagcttatg 10640014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 24030469 - 24030419
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||| |||||| ||||||||| || |||||| |||||||||||||||||||    
T  24030469 taagttgtttttataagctatattagataacttatgaaaataagctaaaaa 24030419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 34736472 - 34736434
Alignment:
Q  234 ataagctcaaataagtcaatctaaacatgccctaattgg 272  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  34736472 ataagctcaaataagtcaatccaaacatgccctatttgg 34736434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 8651310 - 8651265
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 266  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||    
T  8651310 tttatgctagaagataagctcaaataaggcaatccaaacatgccct 8651265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 11457152 - 11457236
Alignment:
Q  104 agcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 189  Q
    ||||||||||| ||| ||| ||| ||||| |||||||||||  |||||||| || | || || ||| |||||||||||||||||||    
T  11457152 agcttatggacatgtcataagtt-gtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataa 11457236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 12975334 - 12975375
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  12975334 ttttcatataagctataagctgtgttcataagctatcttgga 12975375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 16937841 - 16937800
Alignment:
Q  163 cttatgctaatagataagctcaaataaaacaatccaaacagg 204  Q
    ||||||||| |||||||||||||||||  |||||||||||||    
T  16937841 cttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 36796789 - 36796708
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 118  Q
    |||||| ||||||| ||||||||||||||  ||||| ||||| ||| ||  ||||||| || |||| |||||||| ||||||    
T  36796789 ttttcacataagctataagctgttttcatttgctatattggaaaacttacaaaaataaactgaaaacagcttatgaacgtgt 36796708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 37526282 - 37526209
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| |||||||||||| | || |||| | | |||| ||||||||| |||| |||||||    
T  37526282 ttttcatataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 40119945 - 40119880
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||||||| ||| |||||||||||||| || ||||||||| | ||||||||| |||| || |||||    
T  40119945 tataagctataacctgttttcataagcgatcttggataacttgtgaaaataatctaagaacagctt 40119880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 41957534 - 41957457
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||| |||| | |||||||||||||||||||||  | || ||| |||||||||||| | |||| | |||||||||    
T  41957534 ttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggac 41957457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 1619083 - 1619150
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| |||||||||||||||||| | |||||| | ||||||||||| |||| |||| || |||||    
T  1619083 tataagctataagctgttttcataagcca-tttggagagcatatgaaaatcagctgaaaacagtttatg 1619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 6938693 - 6938649
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||||| |||||||||||||||||   |||||||||||||    
T  6938693 tgcttatgctagtagataagctcaaataacctaatccaaacaggc 6938649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 7705955 - 7705911
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgccct 266  Q
    ||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  7705955 ttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 32942611 - 32942659
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaa 91  Q
    |||| ||| ||||||||||||||||||||| ||||| ||| ||||||||    
T  32942611 tatatgctataagctgttttcataagctatcttggagaacttatgaaaa 32942659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 42582914 - 42582982
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgtta 120  Q
    |||||||||||  |||||||| ||||| ||| |||||||||||||| |||| || ||||| || |||||    
T  42582914 taagctgtttttgtaagctatattggagaacttatgaaaataagctcaaaacagtttatgaacatgtta 42582982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 37273140 - 37273272
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtctt 155  Q
    ||||||||||||||||| ||||| ||| |||| ||||||| | |||| | ||||||||| ||| ||| ||| ||||| ||||||||| |  ||||||||     
T  37273140 ctgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagtt-gtttccataagctctcccaaacagtctc 37273238  T
Q  156 accaatgcttatgctaatagataagctcaaataa 189  Q
    |||| |||||||||||||| ||||| ||||||||    
T  37273239 accagtgcttatgctaataaataagttcaaataa 37273272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 45541580 - 45541726
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttacc 158  Q
    |||||||||||||| ||||||||| ||||| ||||| || |||| |||||||| || ||| ||| |  |||||  ||||| |||||  |||||||||||     
T  45541580 ttttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataag-ctgttttcataagttcttctaaacagtcttaca 45541678  T
Q  159 aatgcttatgctaatagataagctcaaataaaacaatccaaacaggct 206  Q
    | || |||| | | || ||||||||||||||  |||||||||||||||    
T  45541679 agtgtttataccattaaataagctcaaataagtcaatccaaacaggct 45541726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 2923466 - 2923629
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataa 137  Q
    |||||| |||||| ||||||||||||||||||||   || | |   |||  |||||||||||||||| ||||||||| |||  || ||| ||||||||||    
T  2923466 tttcatgtaagctataagctgttttcataagctacactgaagagattatataaataagctaaaaataacttatggacatgtagtaagtt-gtttctataa 2923564  T
Q  138 gctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    | |||||  ||||||||| | | | ||||||  ||||||||||||| |||||  |||||| ||||    
T  2923565 gttcttccaaacagtctttcaagtacttatgtcaatagataagctcgaataagtcaatccgaaca 2923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 25459624 - 25459548
Alignment:
Q  127 tgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacag 203  Q
    ||||||| ||||||||||  |||| ||| || | ||||||||||| | |||||||||||||||| ||||||||||||    
T  25459624 tgtttctctaagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacag 25459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 33972797 - 33972729
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgt 125  Q
    |||||| ||||||||||||||| ||| | |||||||||||| |||| || |||||||| ||||||||||    
T  33972797 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaaaggttatggacatgttatatgt 33972729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44747485 - 44747418
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||| ||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||  |||||||    
T  44747485 tataggctataagctgttttcataagctatcttggaaaacttatgaaaataagctgaaagaagcttat 44747418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 50600254 - 50600191
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    ||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||| |||| ||||    
T  50600254 ataagctataagctgttttcatcagctatattggagaacttatgaaaataagctgaaaacagct 50600191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 466202 - 466252
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  466202 ttttcataagctatgttggagaacttatgaaaataagctaaaaaaagctta 466252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 2719463 - 2719532
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||| | || | |||||||||    
T  2719463 taagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggac 2719532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 4534431 - 4534291
Alignment:
Q  64 ataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgc 163  Q
    ||||||||||||||| | | ||   |||||||||||||  | |||| | |||||||||| ||| |||||||||| |||| |  || ||| |||| |  ||    
T  4534431 ataagctattttggagaccttacagaaataagctaaaatcaacttacgaacgtgttataagtt-gtttctataacctctaccaaatagttttacaagggc 4534333  T
Q  164 ttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    |||||  |||||||||||||||||||| ||||| ||||||||    
T  4534332 ttatgtgaatagataagctcaaataaatcaatcgaaacaggc 4534291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 33405250 - 33405197
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaa 90  Q
    |||||||||||||| ||||||||||||||||||||| ||| | ||| |||||||    
T  33405250 ttttcatataagctataagctgttttcataagctatcttgaagaacttatgaaa 33405197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 51929854 - 51929895
Alignment:
Q  164 ttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  51929854 ttatgctaatagataagctcaaataagtcaatccaaacaggc 51929895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 21367669 - 21367725
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||| |||| |||||    
T  21367669 taagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagctt 21367725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 34254891 - 34254815
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 113  Q
    |||| |||| |||| ||| || ||||||||||||||| |||| ||| |||| ||||||||| ||| |||||||||||    
T  34254891 tttttatattagctataaactattttcataagctattctggagaacttatgtaaataagctgaaagtagcttatgga 34254815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 2201115 - 2201158
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggata 80  Q
    |||||||||||||| |||||||||||||| |||||| |||||||    
T  2201115 ttttcatataagctataagctgttttcattagctatcttggata 2201158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 16790439 - 16790384
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| ||||||| | ||||||||||| || |||| |||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaataaactgaaaacagcttatggac 16790384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 41633362 - 41633509
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacag 151  Q
    |||||||||||||| |||||||||||| | | |||||||||||||| |||| |  |||| ||| ||| ||   ||||||| ||||| |||| | ||| ||    
T  41633362 taagctgttttcatcagctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat-gatttgtttttataacctctcctgaatag 41633460  T
Q  152 tcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    ||| |  | ||  | ||| |||||||||||||||||||| |||||||||||    
T  41633461 tctcataagtg--tttgccaatagataagctcaaataaaccaatccaaaca 41633509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 2128326 - 2128256
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttata 122  Q
    |||||||||||||||||| || ||  | ||| |||||||||||||| |||| |||||||| || |||||||    
T  2128326 taagctgttttcataagccatcttttagaacgtatgaaaataagctgaaaacagcttatgaacatgttata 2128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 5436246 - 5436304
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||||||| | || ||||||||||||  |||| ||||| ||||||||||||||||    
T  5436246 ttttcatataagttgtatgctgttttcatagactatcttggagaacatatgaaaataag 5436304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 28622074 - 28622008
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| |||||||||||||||| |||| || || ||| ||||||||||| || |||| ||||||||    
T  28622074 taagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatg 28622008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 32582747 - 32582789
Alignment:
Q  53 aagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||||||||||||||||||||| ||| |||| |||||||    
T  32582747 aagctgttttcataagctattttggagaacttatggaaataag 32582789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 36783417 - 36783343
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||| || | ||||||||||||||||||| |||||  |  |||||| ||||||| |||| ||||||||    
T  36783417 ttttcatataaactattagctgttttcataagctatattggagcaattatgaatataagctgaaaacagcttatg 36783343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 50760704 - 50760746
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgcc 264  Q
    ||||||| ||| || ||||||||||||||||||||||||||||    
T  50760704 ttatgcttgtagatgagctcaaataagtcaatctaaacatgcc 50760746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 52618990 - 52619064
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||| | ||||||||||||| ||||||| ||| | | | | |||||||||| | |||||||||||||    
T  52618990 ttttcatataagttataagctgttttcacaagctatcttgaagagcttgtgaaaataaggtgaaaatagcttatg 52619064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 584159 - 584196
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaac 259  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  584159 ttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 9832703 - 9832674
Alignment:
Q  231 taaataagctcaaataagtcaatctaaaca 260  Q
    ||||||||||||||||||||||||||||||    
T  9832703 taaataagctcaaataagtcaatctaaaca 9832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 14548804 - 14548739
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||||||| |||| |||||||||||| |||| |||| | | |||| ||||||||| ||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 14548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 21865563 - 21865604
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| |||| |||||| |||||||||||||||    
T  21865563 ttttcatataagctataagttgttttgataagctattttgga 21865604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 25183071 - 25182994
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttatgga 113  Q
    ||||||||| |||| |||||||||||||||||||||  |||| ||  | || ||||| ||| ||||||||||||||||    
T  25183071 ttttcatatgagctataagctgttttcataagctatcatggaaaatttgtggaaatatgctgaaaaatagcttatgga 25182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 30443886 - 30443951
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| ||| ||||||||||| |||| |||| ||||| ||| |||||||||||||| |||| |||||    
T  30443886 tatatgctataagctgtttttataaactatattggagaacttatgaaaataagctgaaaaaagctt 30443951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 48364871 - 48364834
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaa 258  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  48364871 tttatactagtaaataaactcaaataagtcaatctaaa 48364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 48807811 - 48807848
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaa 258  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  48807811 tttatgctagtaaataagcttaaataactcaatctaaa 48807848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 53762351 - 53762310
Alignment:
Q  164 ttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    |||||||| |||||||||||||||||| |||||||| |||||    
T  53762351 ttatgctagtagataagctcaaataaaccaatccaagcaggc 53762310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 901931 - 901987
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 113  Q
    |||||| ||||||||| ||||| ||| |||||||||||| | |||| ||||||||||    
T  901931 tgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgga 901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 3775846 - 3775770
Alignment:
Q  126 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    ||||||||||||||||| |  |||||||| || | || |||||| | ||||||| |||||||||  |||||||||||    
T  3775846 ttgtttctataagctctgccaaacagtctaacaattgtttatgccagtagataaactcaaataaggcaatccaaaca 3775770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 14145899 - 14145959
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    ||||| |||| ||| |||| | |||||||||||||| |||||| || ||||||||||||||    
T  14145899 ttttcgtatatgctataagttattttcataagctatcttggattacttatgaaaataagct 14145959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 20880469 - 20880537
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| ||| ||||||| | ||||||| ||||| ||| |||||||||||||| |||| ||||||||    
T  20880469 tatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatg 20880537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 39602287 - 39602235
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||| | ||||||||||||||||||||| || || ||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataag 39602235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 43046789 - 43046821
Alignment:
Q  234 ataagctcaaataagtcaatctaaacatgccct 266  Q
    ||||| |||||||||||||||||||||||||||    
T  43046789 ataagttcaaataagtcaatctaaacatgccct 43046821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 43948751 - 43948815
Alignment:
Q  148 acagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtct 212  Q
    ||||||| || ||||||||||  ||||||| | ||||||| |  |||||||||||||||||||||    
T  43948751 acagtctcacaaatgcttatgacaatagattaactcaaattagccaatccaaacaggcttagtct 43948815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 51929853 - 51929897
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaacatgccc 265  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||    
T  51929853 tttatgctaatagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 40689069 - 40688995
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||||||| ||||||||||||  |||||||| |||||||||||||| |||| ||||||||    
T  40689069 ttttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagcttatg 40688995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 47177623 - 47177693
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| ||  |||||||||||||||||| |||||    
T  47177623 ttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataagctaaaagtagct 47177693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 20526448 - 20526505
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||||| ||||||    
T  20526448 taagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagctta 20526505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 38010701 - 38010790
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||||| |||||||||||||||| ||||  | || ||| |||| |||||||||||||| |||||||| || |||||| ||||    
T  38010701 ttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgtt 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 47510116 - 47510190
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||||||||||||||| || | ||||| ||| | ||||||||||||||||  ||||||||    
T  47510116 ttttcatataagctgtaagctgttttcataaactctcttggacaacttgtgaaaataagctaaaaggagcttatg 47510190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 6263446 - 6263382
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaa 101  Q
    |||||||||||| | ||||||| |||||||||||||| |||| | |||||| |||||||||||||    
T  6263446 ttttcatataagttataagctgatttcataagctattatggagagcatatggaaataagctaaaa 6263382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 27548250 - 27548310
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||| |||| | |||||||    
T  27548250 ttttcatttaagctataagctgttttcataagctatcttggataacttatggagataagct 27548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 12110353 - 12110412
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| ||||||||||||||||||||| ||| | ||| ||||||||||| |||||||    
T  12110353 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaa 12110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 24363560 - 24363517
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaacagg 204  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  24363560 tgcttatgctagtagataaactcaaataaaacaatccaaacagg 24363517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 48470046 - 48470105
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||    
T  48470046 taagttgttttcataagctattttgaataacttatgaacataagctcaaaaaagcttatg 48470105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 48157203 - 48157075
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    |||| ||||||||| |||  |||||||| ||||||||  ||| | | |||| ||||||||| |||| ||||||||||| ||  ||| | |||||||||||    
T  48157203 ttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataag-ttgtttctata 48157105  T
Q  137 agctcttcggaacagtcttaccaatgctta 166  Q
    |||||| |  |||||||| || ||||||||    
T  48157104 agctctcccaaacagtctcacaaatgctta 48157075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 23214954 - 23215014
Alignment:
Q  208 agtctcattggtctttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 268  Q
    ||||||||  || |||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  23214954 agtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaacatgctctaa 23215014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 44821952 - 44822004
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||| | |||||||||||||||||||||| |||| ||| ||||||||||||    
T  44821952 tataagttataagctgttttcataagctattctggagaacttatgaaaataag 44822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 752962 - 753029
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||| ||||||||||| |||| |||| ||||  | ||||||||||| ||||||||| |||||||    
T  752962 tataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttat 753029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 43648242 - 43648285
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||||||||||||||||||| ||||| || |||||||||||||    
T  43648242 taagctgttttcataagctatcttggagaaaatatgaaaataag 43648285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 45790502 - 45790443
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| |||| |||||| |||| |||| ||||||||| |||||||||||||| ||||    
T  45790502 tataagctataagttgtttttataaactatattggataacttatgaaaataagctgaaaa 45790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 6601369 - 6601431
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||| |||||||||| ||||   | |||||||||||||| | ||||||||||||||    
T  6601369 taagctgtttttataagctattctggagtgcttatgaaaataagctgagaatagcttatggac 6601431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 33128755 - 33128813
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||| ||||| |||| ||||| ||| | ||||||||||||||||| |||||||    
T  33128755 taagctgtttacataaactatattggagaacttgtgaaaataagctaaaaaaagcttat 33128813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 39505944 - 39506014
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    ||||||||||||  |||| ||||||||||||||||| |||| |   |||| ||||||||| ||||||||||    
T  39505944 tttcatataagcattaagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 33678776 - 33678825
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||| ||||||||||||||||||||| ||||| ||| | ||||||||||    
T  33678776 aagctataagctgttttcataagctatcttggaaaacttgtgaaaataag 33678825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 34083565 - 34083520
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgcccta 267  Q
    |||||| |||| || |||||||||||||||||| ||||||||||||    
T  34083565 ttatgcaagtagatgagctcaaataagtcaatccaaacatgcccta 34083520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 46280349 - 46280284
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| ||| ||||||||||| ||||||||| ||||| ||| |||||||||| ||| |||| |||||    
T  46280349 tatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaaagctt 46280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 5010426 - 5010390
Alignment:
Q  224 atgctagtaaataagctcaaataagtcaatctaaaca 260  Q
    |||||||||||||| |||||||||||||||| |||||    
T  5010426 atgctagtaaataaactcaaataagtcaatcaaaaca 5010390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 28340924 - 28340892
Alignment:
Q  40 tcatataagctctaagctgttttcataagctat 72  Q
    ||||||||||| |||||||||||||||||||||    
T  28340924 tcatataagctataagctgttttcataagctat 28340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 30535550 - 30535622
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||| ||||| || |||||||||| |||||||||| ||  | ||||||||||||||| || |||| ||||||    
T  30535550 ttttcgtataatctataagctgtttccataagctatcttatagaacatatgaaaataacctgaaaacagctta 30535622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 32410648 - 32410688
Alignment:
Q  159 aatgcttatgctaatagataagctcaaataaaacaatccaa 199  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
T  32410648 aatgcttatgccaatagataagctcaaataagccaatccaa 32410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 36517588 - 36517640
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||||||||||    
T  36517588 ttttcataagctatcttggagaaattatgaaaataaactgaaaatagcttatg 36517640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 40371599 - 40371567
Alignment:
Q  234 ataagctcaaataagtcaatctaaacatgccct 266  Q
    ||||||||||||||||||||| |||||||||||    
T  40371599 ataagctcaaataagtcaatccaaacatgccct 40371567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  224 atgctagtaaataagctcaaataagtcaatctaaaca 260  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 47559669 - 47559629
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaat 92  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  47559669 taagctgttttcataagttattttggagaacttatgaaaat 47559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 18066115 - 18066189
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||| || ||||||||| | |||||||||||||    
T  18066115 ttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatg 18066189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 15377752 - 15377903
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagc-taaaaatagcttatggacgtgttatatgtttgtttctat 135  Q
    |||||||||||| | |||||||||||||||||||||| ||   | | ||||||||||| | |||||||||||||||||||||| ||| | ||||||| ||    
T  15377752 ttttcatataagttataagctgttttcataagctattctgaggagcttatgaaaataaacttaaaaatagcttatggacgtgtcataag-ttgtttccat 15377850  T
Q  136 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 189  Q
     || | |||  ||||| ||||| | |||||||| || || ||||||||||||||    
T  15377851 -agattttccaaacagccttacaattgcttatgttagtacataagctcaaataa 15377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 18179323 - 18179246
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| ||||||| |||||||||||||  |||| ||| || ||||||||||| ||||||||| ||||||    
T  18179323 ttttcatataagctataagctgctttcataagctatcctggagaacttacgaaaataagctgaaaatagctaatggac 18179246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 22681268 - 22681179
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||||| |||||||||||||||| ||||  | || ||| |||| |||||||||||||| |||||||| || |||||| ||||    
T  22681268 ttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgtt 22681179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 11513885 - 11514047
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    |||||||||||||| |||| ||||||||||||||||  |||| ||| | || ||||||||| |||||||||||| | | ||  ||     |||||  |||    
T  11513885 ttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagcttataggcatgccat---gctgttttcata 11513981  T
Q  137 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    ||||||    |||||||| || | ||||||||||| ||||||| |||||||||| |||||||||||    
T  11513982 agctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 8017421 - 8017477
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaata 93  Q
    |||||||||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||    
T  8017421 ttttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 2416426 - 2416473
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaat 269  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  2416426 ttatgttagtagataaactcaaataagtcaatctaaacatgccctaat 2416473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 15370297 - 15370239
Alignment:
Q  147 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    |||||||| || ||||||||||| | |||||||||||||||||  ||||||||||||||    
T  15370297 aacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggc 15370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 32821848 - 32821961
Alignment:
Q  89 aaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaata 188  Q
    |||||| || |||| ||||||||||| ||| ||| ||| |||||||||| ||||||  ||||||||| | |||||||| | |  ||||||||||||||||    
T  32821848 aaataaactgaaaacagcttatggacatgtcataagtt-gtttctataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaata 32821946  T
Q  189 aaacaatccaaacag 203  Q
    |  ||||| ||||||    
T  32821947 agtcaatctaaacag 32821961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 6167358 - 6167305
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagcta 98  Q
    |||||| ||||||||||| ||||||||||||||| ||| |||| ||||||||||    
T  6167358 taagctataagctgtttttataagctattttggagaacttatggaaataagcta 6167305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 29643498 - 29643465
Alignment:
Q  38 tttcatataagctctaagctgttttcataagcta 71  Q
    ||||||||||||||||||||||||||||||||||    
T  29643498 tttcatataagctctaagctgttttcataagcta 29643465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 39983329 - 39983402
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||| ||||||||||||||||  |||| | |  |||||||||| || ||||||||||||    
T  39983329 ttttcatataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttat 39983402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 42457943 - 42458000
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| |||||| |||||||||||| || || |||||||||||||||||| ||||    
T  42457943 taagctcttagctgtattcataagctatcttagagaacatatgaaaataagctgaaaa 42458000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 26143708 - 26143656
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaata 104  Q
    ||||||||||||||||||||  ||||| ||| |||||||||||||| ||||||    
T  26143708 taagctgttttcataagctaacttggagaacttatgaaaataagctgaaaata 26143656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 33503105 - 33503153
Alignment:
Q  158 caatgcttatgctaatagataagctcaaataaaacaatccaaacaggct 206  Q
    |||||||||||||| |||||||||||||||||  |||| ||||||||||    
T  33503105 caatgcttatgctagtagataagctcaaataagccaatacaaacaggct 33503153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 40279190 - 40279258
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||| |||| ||||||| |||||    
T  40279190 tataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatg 40279258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 3611232 - 3611287
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||| ||||||| ||||| ||| ||||||||||||||||||| || |||||    
T  3611232 ctgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttatg 3611287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 6993805 - 6993730
Alignment:
Q  39 ttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||| || | ||||||||||||||||  | || | | ||||||||||||||||||||  |||||||||    
T  6993805 ttcatataagctataggttgttttcataagctatgcttgagagcttatgaaaataagctaaaaatgacttatggac 6993730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 9174817 - 9174876
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||||||||||| ||  | | | |||||||||||||| |||||||||||||    
T  9174817 taagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatg 9174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 9395245 - 9395280
Alignment:
Q  225 tgctagtaaataagctcaaataagtcaatctaaaca 260  Q
    |||||||||||||||||||||||||||||| |||||    
T  9395245 tgctagtaaataagctcaaataagtcaatccaaaca 9395280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 14302918 - 14302961
Alignment:
Q  147 aacagtcttaccaatgcttatgctaatagataagctcaaataaa 190  Q
    |||||||| || |||| |||||||||||||||||||||||||||    
T  14302918 aacagtctcacaaatgtttatgctaatagataagctcaaataaa 14302961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 25800816 - 25800851
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctat 72  Q
    |||||||||||||| |||||||||||||||||||||    
T  25800816 ttttcatataagctataagctgttttcataagctat 25800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 33931647 - 33931612
Alignment:
Q  43 tataagctctaagctgttttcataagctattttgga 78  Q
    |||||||| |||||||||||||||||||||||||||    
T  33931647 tataagctataagctgttttcataagctattttgga 33931612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 42621452 - 42621393
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||| ||||||||||||||||| |||| |||| ||| | |||||||||||| ||||    
T  42621452 tataagctataagctgttttcataagttattctggagaacttgtgaaaataagctgaaaa 42621393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 6772478 - 6772444
Alignment:
Q  234 ataagctcaaataagtcaatctaaacatgccctaa 268  Q
    ||||||||||||||||||||| |||||||||||||    
T  6772478 ataagctcaaataagtcaatccaaacatgccctaa 6772444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 10285970 - 10286012
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaacag 203  Q
    ||||||||| |||||||||||| |||||| |||||||||||||    
T  10285970 tgcttatgcaaatagataagcttaaataagacaatccaaacag 10286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 26626860 - 26626934
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| ||||||||  |||||||||||||||||||| ||| | ||| ||||||||||| || |||| || |||||    
T  26626860 ttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatg 26626934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 29316858 - 29316784
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| |||| || |||||||||||||| |||||| ||||| ||| |||| ||||||||| |||| | ||||||    
T  29316858 ttttcacataatctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatg 29316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 33319876 - 33319822
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| |||| |||||||    
T  33319876 ctgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 33319822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 35378489 - 35378443
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 268  Q
    |||||||| || ||||||||||||||| ||||| |||||||||||||    
T  35378489 ttatgctattatataagctcaaataagccaatccaaacatgccctaa 35378443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 37448734 - 37448696
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaaca 260  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  37448734 ttatgctggtagataagctcaaataagtcaatctaaaca 37448696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 40279409 - 40279471
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||| | |||| || ||||||||    
T  40279409 taagttgttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatggac 40279471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 680490 - 680555
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||||| |||||| |||||||||||||| ||| | ||| | |||||||||||| ||||    
T  680490 ttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaa 680555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 1893355 - 1893290
Alignment:
Q  46 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| ||||||||||||  ||||||| ||||| ||| | |||||||||||| |||||| ||||||    
T  1893355 aagctataagctgttttcggaagctatcttggagaacttgtgaaaataagctgaaaataacttatg 1893290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 9395117 - 9395190
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    ||||||||||| || |||||||||||||| || |||| || | | | |||||||||||||| |||| |||||||    
T  9395117 ttttcatataatctataagctgttttcattagttattctgtagagcttatgaaaataagctgaaaacagcttat 9395190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 12464550 - 12464485
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||| ||| |||||| |||||||||||||| ||||| ||| | |||||||||||| |||| |||||    
T  12464550 tatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagctt 12464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 16353848 - 16353889
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  16353848 ttttcatataagctataagctgtttttataagctatcttgga 16353889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 16398116 - 16398173
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||| |||||||||| ||| ||||| ||| |||||||||||||| |||| ||||||    
T  16398116 taagctattttcataagttatgttggagaacttatgaaaataagctgaaaacagctta 16398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 34652097 - 34652017
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagct 140  Q
    |||||||||||||| ||||| | | |||| ||||||| | |||| ||||||||||| ||| ||| | |||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataag-ttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 35378598 - 35378541
Alignment:
Q  54 agctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||| ||||| || ||||||| | |||||||||||||| |||||| ||||||    
T  35378598 agctgttttcgtaagcaatcttggatagcttatgaaaataagctgaaaataacttatg 35378541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 41875736 - 41875675
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagcta 98  Q
    ||||| |||||||| ||||||||||||||||||||| ||||  | | || ||||||||||||    
T  41875736 ttttcgtataagctgtaagctgttttcataagctatcttggtgagcttaagaaaataagcta 41875675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 750664 - 750731
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| | |||||||| |||||||||| ||||| ||| |||| ||||||||| |||| ||||||||    
T  750664 tataagctatgagctgttt-cataagctatcttggagaacttatgcaaataagctcaaaacagcttatg 750731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 938593 - 938517
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 113  Q
    |||||||||||||| ||||| || |||||||||||| || || | | | |||||||||| | ||||| |||||||||    
T  938593 ttttcatataagctataagcggtattcataagctatcttagagagcttctgaaaataagtttaaaatggcttatgga 938517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 3458707 - 3458747
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaacat 261  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  3458707 tttatgccagtaagtaagctcaaataagtcaatcttaacat 3458747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 40759270 - 40759314
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||    
T  40759270 tgcttatgtcaatagataagctcaaataaggcaatccaaacaggc 40759314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 42592326 - 42592358
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagc 69  Q
    |||||||||||||| ||||||||||||||||||    
T  42592326 ttttcatataagctataagctgttttcataagc 42592358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 42868437 - 42868397
Alignment:
Q  165 tatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  42868437 tatgccaatagataagctcaaataaggcaatccaaacaggc 42868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 4622079 - 4622157
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||||||| |||||||||| |||| ||||| ||||| | | | ||||||||||||||||| |||||||||||    
T  4622079 cttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacagcttatggac 4622157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 7137075 - 7137007
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  7137075 tataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatg 7137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 9656637 - 9656711
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||| |||||||| ||||||||||||  ||||| |  |||||||||||||| |||| ||||||||    
T  9656637 ttttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaataagctcaaaacagcttatg 9656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 28482315 - 28482242
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||| | | || ||||||||||||||||||| |||||    
T  28482315 tttcatataagctataagctgtttttataagttatcttggagagcttacgaaaataagctaaaaatagtttatg 28482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 27820414 - 27820346
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| || |||||||| ||||||||| ||||| ||  |||||||||||||| |||||||||||||    
T  27820414 tataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 27820346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 34290229 - 34290297
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||||||||||||||||||||| ||| | ||| |||||||||||||| |||| | ||||||    
T  34290229 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatg 34290297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 35179141 - 35179201
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 112  Q
    ||||||||||||||||| |||| |||| ||| |||||||||||||| |||| |||||||||    
T  35179141 taagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatgg 35179201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 45975683 - 45975751
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||||||  |||||||||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  45975683 tataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 45975751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 6231899 - 6231733
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    ||||||||||| || |||||||||||| |||||||   || | ||| |||  ||||||||| |||| || |||||||| ||| || |  ||||||| ||     
T  6231899 ttttcatataatctataagctgttttcgtaagctaacctgaagaacttatagaaataagctgaaaacagtttatggacatgtcat-tagttgtttccatg 6231801  T
Q  137 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacagg 204  Q
    |||| | | ||||| ||| || |||| |||||||| ||||||| |||||||||| |||| ||||||||    
T  6231800 agctatccagaacaatctcacaaatgtttatgctagtagataacctcaaataaaccaattcaaacagg 6231733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 31517822 - 31517672
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataa 137  Q
    ||||||||||||| |||||||| ||||||| || | ||||| | | |||||||||||||| |||| |||||||| || ||| ||  | ||||||  ||||    
T  31517822 tttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgag-ttgttttgataa 31517724  T
Q  138 gctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 189  Q
    | ||| |  |||||||| || | ||||||||| | || ||||||||||||||    
T  31517723 gttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataa 31517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 42556563 - 42556525
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaaca 260  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  42556563 ttatgctagtatataagctcaaataagtcaatctaaaca 42556525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 51695558 - 51695504
Alignment:
Q  57 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||||| ||||| ||  |||||||||||||| |||||||||||||    
T  51695558 tgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 51695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 4576807 - 4576852
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  4576807 taagctgttttcataagctatattgaataacttatgaaaataagct 4576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 7218157 - 7218076
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 118  Q
    |||||||||||||| |||| ||||||||||| ||||  |||| ||| |||||||||||| | |||| ||||| || ||||||    
T  7218157 ttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgt 7218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 39603899 - 39603842
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||| |||||| ||| ||||||||||||| | |||||||||||||| |||||||||||    
T  39603899 taagttgtttttatatgctattttggatagcttatgaaaataagctgaaaatagctta 39603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 12763419 - 12763475
Alignment:
Q  147 aacagtcttaccaatgcttatgctaatagataagctc-aaataaaacaatccaaaca 202  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||||||    
T  12763419 aacagtcttacaaatgcttatgctaatagataaactcaaaataagccaatccaaaca 12763475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 27963452 - 27963376
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||| ||| |||||| ||||||||||||||||| |||| | | |||  |||||||||||||| | |||||||||    
T  27963452 tttcataaaagttctaagttgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggac 27963376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 28689537 - 28689458
Alignment:
Q  37 ttttcatataagctctaagctgttttcata--agctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||| | | |||||||||||||| |||| | |||||||||    
T  28689537 ttttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggac 28689458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 38867909 - 38867849
Alignment:
Q  42 atataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||||||| ||| ||||||||||||| ||| ||| | ||| |||||||||||||||||||    
T  38867909 atataagctttaaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaa 38867849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 11695975 - 11696021
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaat 269  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  11695975 ttatgctaataaataagctcaaataagtcaatccaaaca-gccctaat 11696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 25944420 - 25944491
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||| |||| | ||||| |||||||||||||||  ||||| |  |||||||||||||| |||||||||||    
T  25944420 tttcatgtaagttataagcggttttcataagctatcctggattaattatgaaaataagctgaaaatagctta 25944491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 38189773 - 38189816
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||    
T  38189773 ttttcttaagctattttggataacttatgaagataagctaaaaa 38189816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 39270506 - 39270431
Alignment:
Q  39 ttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||| | ||||||||||||||||||||   | || | |||||||||||||| | |||| |||||||||||    
T  39270506 ttcatataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggac 39270431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 2294905 - 2294975
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||| |||||| ||||||||| |||| ||||| ||| || ||||||||| | |||| |||||||||||    
T  2294905 ataagctataagctattttcataaactatcttggagaacttacgaaaataaggtgaaaacagcttatggac 2294975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 4549536 - 4549462
Alignment:
Q  126 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaa 200  Q
    ||||||||||||||||| |  |||||||| |  ||||||||||| | ||||||| |||||||||  |||||||||    
T  4549536 ttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 16145035 - 16144981
Alignment:
Q  55 gctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||| |||||||| |||| ||| ||||| ||||||||||| ||||||||||||||    
T  16145035 gctgctttcataaactatcttgaataacttatgaaaataacctaaaaatagctta 16144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 16322836 - 16322910
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||| ||| | ||||||||||||||| ||||||||| | | | |||| |||||||||||||| | ||||||    
T  16322836 ttttcatagaagttataagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 28467548 - 28467586
Alignment:
Q  224 atgctagtaaataagctcaaataagtcaatctaaacatg 262  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28467548 atgctagtaaataaactcaaataagtcaatccaaacatg 28467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 37631517 - 37631475
Alignment:
Q  163 cttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||||||||| |||||||||||  ||||||||||||||    
T  37631517 cttatgctaatagatgagctcaaataagccaatccaaacaggc 37631475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 41195257 - 41195203
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| |||| |||||||    
T  41195257 ctgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 41195203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 49888754 - 49888824
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    ||||| |||||||| | || |||||||||||||||| || || ||| |||||||||||||  |||||||||    
T  49888754 ttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataagccgaaaatagct 49888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 2777885 - 2778040
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 142  Q
    |||||||| ||||||||||| ||||| ||  ||||| ||| |||||||||||||| ||||  ||||||| |   || ||| ||| ||||| ||||| |||    
T  2777885 tataagctataagctgttttaataagttaacttggagaacttatgaaaataagctgaaaacggcttatgaatacgtcataagttggtttc-ataagttct 2777983  T
Q  143 tcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaa 200  Q
     |  |||||||| | |||  ||||||| |||||||||||| ||||||  |||||||||    
T  2777984 cctaaacagtctca-caaaacttatgcaaatagataagctaaaataagccaatccaaa 2778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 6774976 - 6775048
Alignment:
Q  38 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||  |||||||||||| ||||||| ||| | |||||| | ||||||||| |||| ||||||||    
T  6774976 tttcatataagcta-aagctgttttcacaagctatcttgaagaacataagtaaataagctgaaaacagcttatg 6775048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 7941615 - 7941664
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagctt 108  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||||||||||    
T  7941615 ttttcataagctatttcggagaacttatgaaaataagttgaaaatagctt 7941664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 24279861 - 24279898
Alignment:
Q  221 tttatgctagtaaataagctcaaataagtcaatctaaa 258  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  24279861 tttatgctagtaaataagttcaaataagacaatctaaa 24279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 25006117 - 25006076
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttgga 78  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  25006117 ttttcatataagctataagttgttttcataagctatcttgga 25006076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 27887197 - 27887136
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||| |||| ||||||||||| ||||  |||| | ||||| |||||||||||||||    
T  27887197 catataagctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaa 27887136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 30371135 - 30371212
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||||||||| |||| ||||||||||||  |||||||| | | |||  ||||||||| |||| | |||||||||    
T  30371135 ttttcatataagctataagttgttttcataagacattttggagagcgtattgaaataagctgaaaacaacttatggac 30371212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 1662686 - 1662722
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaa 258  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1662686 ttatgctagtagataagctcaaataagccaatctaaa 1662722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 11695974 - 11696014
Alignment:
Q  163 cttatgctaatagataagctcaaataaaacaatccaaacag 203  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  11695974 cttatgctaataaataagctcaaataagtcaatccaaacag 11696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 15361700 - 15361736
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctatt 73  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15361700 ttttcatataagctataagctgttttcataagatatt 15361736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 17420190 - 17420356
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    |||||||||||||| ||| |||||||| |||||||| |  || |||  ||| ||||||| | |||| |  |||||||| ||| ||| | ||||||  |||    
T  17420190 ttttcatataagctataaactgttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataag-ttgttttcata 17420288  T
Q  137 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||  |||||||| || | || ||||||||||| | || |||||||||| ||||  ||||||||    
T  17420289 agctcttcaaaacagtctaacaagtgtttatgctaata-aaaaactcaaataaaccaattgaaacaggc 17420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 24915128 - 24915060
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| ||||||||||||||||||| | ||||| ||| | |||||||||| | |||| ||||||||    
T  24915128 tatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatg 24915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 25005880 - 25005808
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    |||||||||||||| |||| ||||||||||||||||  |||| | | ||| |||| ||||| |||||| ||||    
T  25005880 ttttcatataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaatatctta 25005808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 29723602 - 29723634
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatc 254  Q
    |||||||||||||||||||||||| ||||||||    
T  29723602 ttatgctagtaaataagctcaaattagtcaatc 29723634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 42174848 - 42174916
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| |||| |||||| ||||| ||| ||||| ||| |||||||||||| |||||| ||||||||    
T  42174848 tatatgctataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatg 42174916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 44422686 - 44422746
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||||||||||||| |||||| |||| |||||||||  |||| | | ||||||||||||||    
T  44422686 ttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagct 44422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 48830159 - 48830123
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctatt 73  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  48830159 ttttcatataagctataaactgttttcataagctatt 48830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 4246397 - 4246474
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    ||||||||||| || |||||||||||||||||||||| |||| | ||||| |||||||| | |||| |||||||||||    
T  4246397 ttttcatataatctataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggac 4246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 8010359 - 8010509
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacag 151  Q
    ||||||||||| ||||| |||  |||| ||| |||  |||||| || ||||||||||||| || ||| ||  ||| ||||||||||||||| | | || |    
T  8010359 taagctgttttaataagttatcctggagaacttatagaaataaactgaaaatagcttatgaacatgtcatgagtt-gtttctataagctctcctggactg 8010457  T
Q  152 tcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacag 203  Q
    ||| || |||| |||||| |||||||||||||| ||||  ||||||||||||    
T  8010458 tctcacaaatgtttatgccaatagataagctcacataagtcaatccaaacag 8010509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 7148652 - 7148817
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 135  Q
    |||| |||||||||| |||| | |||| ||||||||   |||| | | |||||||||||| | ||||||||||||||||  || ||| ||| |||||  |    
T  7148652 ctttacatataagctataaggtattttaataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagtt-gtttccgt 7148750  T
Q  136 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    ||||||| | ||||| ||| || | ||||||||| | |||||||||||||||||  ||| |||||||    
T  7148751 aagctctgctgaacactctcacaagtgcttatgcgactagataagctcaaataagtcaaaccaaaca 7148817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 29249513 - 29249550
Alignment:
Q  229 agtaaataagctcaaataagtcaatctaaacatgccct 266  Q
    |||||||||||||||||||||||||| |||||||||||    
T  29249513 agtaaataagctcaaataagtcaatccaaacatgccct 29249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 31461756 - 31461829
Alignment:
Q  135 taagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggctta 208  Q
    |||||||||  ||||||||| || | | ||||||| |||||||||||||||||||| | || ||||||||||||    
T  31461756 taagctcttgcgaacagtctcacaagtacttatgcaaatagataagctcaaataaaccgatgcaaacaggctta 31461829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 103542 - 103585
Alignment:
Q  163 cttatgctaatagataagctcaaataaaacaatccaaacaggct 206  Q
    |||||||||||| ||||||||||||||  |||||||||||||||    
T  103542 cttatgctaatatataagctcaaataagtcaatccaaacaggct 103585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 34430529 - 34430470
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| |||||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  34430529 taaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatg 34430470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 835317 - 835267
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  835317 taagcagttttcataagctatcttggagaacttatgaaaataagctgaaaa 835267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 2455819 - 2455948
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttacc 158  Q
    |||||||||||||| ||||| | | |||| ||||||| | ||||||| |||||| | ||| ||| | ||||||| |||||||||||  |||| |||  |     
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataag-ttgtttccataagctcttctaaacaatctcgca 2455917  T
Q  159 aatgcttatgctaatagataagctcaaataa 189  Q
    | |||||||||   |||||||||||||||||    
T  2455918 agtgcttatgccggtagataagctcaaataa 2455948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 24476589 - 24476663
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||||||  ||||| ||||| ||||||||||||||| |||  ||  ||||||| | |||||||||||||    
T  24476589 ttttcatataagcgataagcagttttgataagctattttggagaacggattgaaataagttgaaaatagcttatg 24476663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 31624085 - 31624151
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||| ||||||||||||||| ||||| ||||| ||  |||||||||||| | |||| ||||||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatg 31624151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 9093639 - 9093574
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||| |||||||| ||||||||||||||||||| | || || ||| || ||||||||||| ||||    
T  9093639 ttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 27924634 - 27924601
Alignment:
Q  89 aaataagctaaaaatagcttatggacgtgttata 122  Q
    |||||||||||||||| |||||||||||||||||    
T  27924634 aaataagctaaaaataacttatggacgtgttata 27924601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 28641824 - 28641747
Alignment:
Q  45 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttata 122  Q
    |||||| ||| |||||||||  ||||||| || | | | ||||||||||||||||||| |||||||| || |||||||    
T  28641824 taagctataaactgttttcaatagctattctgcagagcttatgaaaataagctaaaaacagcttatgaacatgttata 28641747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 31671157 - 31671092
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||||||||||||| |||||||||||| ||| ||||  | |||| | |||||||||||||| ||||    
T  31671157 ttttcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaa 31671092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 835219 - 835179
Alignment:
Q  163 cttatgctaatagataagctcaaataaaacaatccaaacag 203  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  835219 cttatgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 2735062 - 2735130
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || |||||||||||||||||| || ||| | ||| |||||||||||||  |||| ||||||||    
T  2735062 tataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatg 2735130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 3202024 - 3201956
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || |||||| | |||||||||||| ||||||||||||||  |||||||| |||| | ||||||    
T  3202024 tataaactataagctatgttcataagctatcttggataacatatgggaataagctgaaaacaacttatg 3201956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 4420652 - 4420735
Alignment:
Q  59 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctctt 143  Q
    ||||| |||||||| ||||| | | |||| ||||||||| |||| |||||||| || ||| |||  |||||||||||||||||||    
T  4420652 ttttcctaagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa-tttgtttctataagctctt 4420735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 5977042 - 5977078
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatctaaa 258  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  5977042 ttatgctagtagataagctcgaataagtcaatctaaa 5977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 9109328 - 9109276
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||| |||||||||||||| | ||| |||||| ||| ||||||||||||    
T  9109328 tataagctataagctgttttcattaactaatttggagaacctatgaaaataag 9109276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 9604842 - 9604878
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggat 79  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  9604842 tataagctataagctgttttcataagttattttggat 9604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 12111077 - 12111121
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 205  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||    
T  12111077 tgcttatgctagtagataagctcaaataagtcaatccaaataggc 12111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 12111080 - 12111112
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatc 254  Q
    ||||||||||| |||||||||||||||||||||    
T  12111080 ttatgctagtagataagctcaaataagtcaatc 12111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 24982698 - 24982762
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 107  Q
    |||| ||| ||||||||||||||||| ||||||||| ||| |||||   ||||||||||| ||||    
T  24982698 tatatgctataagctgttttcataagttattttggagaacttatgagggtaagctaaaaaaagct 24982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 31338090 - 31338122
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtcaatc 254  Q
    ||||||||||| |||||||||||||||||||||    
T  31338090 ttatgctagtagataagctcaaataagtcaatc 31338122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 31813174 - 31813222
Alignment:
Q  63 cataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||||||||| ||||| |||||||||||||||||| ||||  |||||||    
T  31813174 cataagctatcttggagaacatatgaaaataagctgaaaacggcttatg 31813222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 17822942 - 17822874
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    |||| ||| |||| |||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||    
T  17822942 tatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatg 17822874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 23459615 - 23459777
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    ||||| |||||||| |||||||||||||||||  || ||| | ||| |||||| ||||| | |||||| |||||  || ||| ||| | || |||| |||    
T  23459615 ttttcttataagctataagctgttttcataagagatcttgaaaaacttatgaatataagttgaaaataacttattaacatgtcataagcttttttc-ata 23459713  T
Q  137 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaac 201  Q
    || ||| || |||||||||||| || ||||||||| ||||||||||||||||   ||||||||||    
T  23459714 agttctccgaaacagtcttacc-atacttatgctagtagataagctcaaatatgccaatccaaac 23459777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 42685417 - 42685476
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||||| |||||    
T  42685417 tataagctctaagttgttttcataagctattttggagaacgtgtgaaaataagccaaaaa 42685476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 28615529 - 28615662
Alignment:
Q  56 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgt-ttctataagctcttcggaacagtct 154  Q
    ||||||| ||| ||||| ||||| | | |||| ||||||| | |||||| || |||||| ||| ||| ||| || |||| ||||||||||| ||||||||    
T  28615529 ctgtttttataggctatcttggagagcttatggaaataaggtgaaaatatctaatggacatgtcataagttggtattct-taagctcttcgaaacagtct 28615627  T
Q  155 taccaatgcttatgctaatagataagctcaaataa 189  Q
    ||| ||||||||||  | |||||||||||||||||    
T  28615628 tacaaatgcttatgtcattagataagctcaaataa 28615662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 942184 - 942129
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaa 99  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  942184 ataagttctaagctgttttcataagctattatggagaacttataaaaataagctaa 942129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 9841053 - 9841141
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttatggacgtgttatatgtt 126  Q
    |||||||||||||| |||| ||||||||||||||||  |||  ||| | |||||||||||| ||||| ||||||||||| ||| |||||||    
T  9841053 ttttcatataagctataagatgttttcataagctatcctgg--aacttgtgaaaataagctgaaaaacagcttatggacatgtcatatgtt 9841141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 16200058 - 16199999
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||| ||| ||||||||||||||||||||| |||||  || |||||||||||||||||||    
T  16200058 tatatgctataagctgttttcataagctatcttggaggacttatgaaaataagctaaaaa 16199999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 44638182 - 44638139
Alignment:
Q  223 tatgctagtaaataagctcaaataagtcaatctaaacatgccct 266  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  44638182 tatgctagtaaataaactcaaataagtcaatccaaacatgccct 44638139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 20031736 - 20031810
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttat 110  Q
    ||||||| |||||| ||||| |||||||||||||||||| || ||| ||||||||| |||| ||||| |||||||    
T  20031736 ttttcatgtaagctataagcagttttcataagctattttagagaacttatgaaaatgagctgaaaaacagcttat 20031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 2996560 - 2996637
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||| ||||||| | |||| |||||||||||||||| ||||| | | |||||||||||| | |||| |||||||||||    
T  2996560 tttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggac 2996637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 55302251 - 55302308
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||| |||| ||||||    
T  55302251 taagctgttatcataagctatgttggaaaacttatgaaaataagctgaaaaaagctta 55302308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 825552 - 825508
Alignment:
Q  58 gttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaaaa 825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 44319936 - 44320099
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 136  Q
    ||||||||||||||  ||||| |||| |||||||||  | || ||| ||||||||| || | ||||||||| |||||    | |||  |||||||  |||    
T  44319936 ttttcatataagctacaagctattttgataagctatcctagagaacttatgaaaattagttgaaaatagctaatggatacatcataa-tttgttttcata 44320034  T
Q  137 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaac 201  Q
    |||||| |  |||||||| || | || |||||| ||||| |||||||||||||| ||||||||||    
T  44320035 agctctcccaaacagtctcacaattgtttatgccaataggtaagctcaaataaaccaatccaaac 44320099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 10205886 - 10205851
Alignment:
Q  234 ataagctcaaataagtcaatctaaacatgccctaat 269  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10205886 ataagctcaaataagtcaatctaaacatgccataat 10205851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 22796763 - 22796806
Alignment:
Q  159 aatgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||    
T  22796763 aatgcttatgctagtagataaactcaaataaatcaatccaaaca 22796806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 24444025 - 24444068
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggata 80  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  24444025 ttttcatataagctataagttgttttcataagctattgtggata 24444068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 25487544 - 25487489
Alignment:
Q  134 ataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 189  Q
    |||||||||||  |||| |||||| | ||||||||||||||||||| |||||||||    
T  25487544 ataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaataa 25487489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 53315360 - 53315478
Alignment:
Q  84 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctc 183  Q
    |||||||||||| |||||||||||||||||| ||| ||||| ||||||  |||||||||    || |||||||    ||||||| | | | |||||||||    
T  53315360 tatgaaaataagttaaaaatagcttatggacatgtgatatg-ttgttttcataagctctcacaaatagtcttatatgtgcttataccagtggataagctc 53315458  T
Q  184 aaataaaacaatccaaacag 203  Q
    ||||||  ||||||||||||    
T  53315459 aaataagtcaatccaaacag 53315478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 1706609 - 1706683
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 111  Q
    ||||| || ||||| |||||||||||||||| |||| ||||| | | |||||||||||| |  ||||||||||||    
T  1706609 ttttcgtagaagctataagctgttttcataaactatcttggacagcttatgaaaataagttggaaatagcttatg 1706683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 27043913 - 27043835
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacg 115  Q
    ||||| |||||||| |||| |||||| |||| |||| ||||| ||| |||||| |||||||||||| |  |||||||||    
T  27043913 ttttcgtataagctataagatgtttttataaactatcttggagaacgtatgaatataagctaaaaacaatttatggacg 27043835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 35571714 - 35571656
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    ||||| |||||||| ||||||||||||||||||||| || || ||| | ||||||||||    
T  35571714 ttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataag 35571656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 52754586 - 52754624
Alignment:
Q  36 cttttcatataagctctaagctgttttcataagctattt 74  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  52754586 cttttcacataagctataagctgttttcataagctattt 52754624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 53626763 - 53626813
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatg 87  Q
    |||||||||||||| |||||||||||||||||| ||| |||| || |||||    
T  53626763 ttttcatataagctataagctgttttcataagcgattatggacaatatatg 53626813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 10172172 - 10172213
Alignment:
Q  161 tgcttatgctaatagataagctcaaataaaacaatccaaaca 202  Q
    |||||||||  ||||||||||||||||||| |||||||||||    
T  10172172 tgcttatgcatatagataagctcaaataaatcaatccaaaca 10172213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 34430655 - 34430626
Alignment:
Q  222 ttatgctagtaaataagctcaaataagtca 251  Q
    ||||||||||||||||||||||||||||||    
T  34430655 ttatgctagtaaataagctcaaataagtca 34430626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 36048520 - 36048593
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 110  Q
    |||||||||||||| |||||| |||||| ||||||| || || | | |||| ||||||||| | ||||||||||    
T  36048520 ttttcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagctgacaatagcttat 36048593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 40174550 - 40174627
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 114  Q
    |||||||| ||||| ||||||||||||||||||||  ||||| ||| | ||| |||||| | |||| || ||||||||    
T  40174550 ttttcataaaagctataagctgttttcataagctacattggagaacttgtgataataagttgaaaacagtttatggac 40174627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 51630098 - 51630163
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 102  Q
    |||| ||||||||| |||||| |||||||||||||| ||| | ||  |||||||||||||| ||||    
T  51630098 ttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaa 51630163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 52315265 - 52315220
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  52315265 taagttgtttccataagctattttggaaaacttatgaaaataagct 52315220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 3637335 - 3637299
Alignment:
Q  164 ttatgctaatagataagctcaaataaaacaatccaaa 200  Q
    ||||||||||||||||||||||||||  |||||||||    
T  3637335 ttatgctaatagataagctcaaataagtcaatccaaa 3637299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 11802528 - 11802596
Alignment:
Q  44 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 112  Q
    |||||||  ||| ||||||||||||||||| |||| | | ||||| |||||||| |||| |||||||||    
T  11802528 ataagctacaagttgttttcataagctattatggagagcttatgagaataagctgaaaacagcttatgg 11802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 29778782 - 29778842
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 97  Q
    |||||||||||||| |||| |||||||||||||||  ||| | | | ||||||||||||||    
T  29778782 ttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaaaataagct 29778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 32421096 - 32421148
Alignment:
Q  41 catataagctctaagctgttttcataagctattttggataacatatgaaaata 93  Q
    |||||||||| ||||| |||| |||||||||||||| | ||| ||||||||||    
T  32421096 catataagctataagcagtttccataagctattttgaagaacttatgaaaata 32421148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 35571589 - 35571549
Alignment:
Q  163 cttatgctaatagataagctcaaataaaacaatccaaacag 203  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  35571589 cttatgctagtagataagctcaaataagccaatccaaacag 35571549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 36460573 - 36460605
Alignment:
Q  37 ttttcatataagctctaagctgttttcataagc 69  Q
    |||||||||||||| ||||||||||||||||||    
T  36460573 ttttcatataagctataagctgttttcataagc 36460605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 49202638 - 49202690
Alignment:
Q  43 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 95  Q
    |||||||| |||| ||||||| |||||||| |||||||||  |||||||||||    
T  49202638 tataagctataagttgttttcgtaagctatcttggataactaatgaaaataag 49202690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 22233 - 22290
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 109  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||| |||| ||||||    
T  22233 taagctgttatcataagctatgttggaaaacttatgaaaataagctgaaaaaagctta 22290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 21353 - 21304
Alignment:
Q  52 taagctgttttcataagctattttggataacatatgaaaataagctaaaa 101  Q
    ||||||||||||||||||||| ||||| ||  ||||||||||| ||||||    
T  21353 taagctgttttcataagctatattggagaaattatgaaaataaactaaaa 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University