View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_3 (Length: 469)
Name: NF1313_low_3
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 35409851 - 35410282
Alignment:
| Q |
19 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
118 |
Q |
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| T |
35409851 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
35409950 |
T |
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| Q |
119 |
aaacggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagtccatatgaggagtccatcagccgcataaggataatc |
218 |
Q |
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| T |
35409951 |
aaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagaccatatgaggagtccatcagccgcataaggataatc |
35410050 |
T |
|
| Q |
219 |
ttcaataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcac |
318 |
Q |
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| T |
35410051 |
ttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctg-aaaaaaagaaagaataaatagttagatcttatcttcttcac |
35410149 |
T |
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| Q |
319 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410150 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
35410249 |
T |
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| Q |
419 |
ggaagaccttccatgtcaaatcgccaccaatct |
451 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
35410250 |
ggaagaccttccatgtcaaaccgccaccaatct |
35410282 |
T |
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