View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_33 (Length: 261)
Name: NF1313_low_33
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 35072897 - 35073124
Alignment:
| Q |
29 |
aattatgtggtccaaattcgtggttgatgcagcataatcaataattttcaaccagctatgatatttattgattgatttttccgttgatgaacaccctagg |
128 |
Q |
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| T |
35072897 |
aattatgtggtccaaattcgtggttgatgcagcataatcaataattttcaaccagctatgatatttattgattgattttgccgttgatgaacaccttagg |
35072996 |
T |
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| Q |
129 |
accaagctagtagcacttccctcatatcatatccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttctagtttct |
228 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35072997 |
cccaagctagtagcacttccc-----tcatatccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttcttgtttct |
35073091 |
T |
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| Q |
229 |
agaaacaaaaataggtaatgactgcataacaac |
261 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35073092 |
agaaacaaaaataggtaatgactgcataacaac |
35073124 |
T |
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