View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_35 (Length: 254)
Name: NF1313_low_35
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13006273 - 13006484
Alignment:
| Q |
1 |
tgtgagagcaacccatgcatcagcgttgaatatatggctcatagtttactgataagtggacatgttgctcgagtggacgcgtagtatttgaacacaaatt |
100 |
Q |
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| T |
13006273 |
tgtgagagcaacccatgcatcagcattgaatatatggctcatagtttactgataagtggacatgttgctcgagtggacgcgtagtatttgaacacaaatt |
13006372 |
T |
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| Q |
101 |
gttctccgtaaccatataagcttgaataatagaaagatattgtagctgctcttcagtcggagacctaagcataattggctgaacttagtgatcaaatatc |
200 |
Q |
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| T |
13006373 |
gttctccgtaaccatataagcttgaataatagaaagatattgtagctgctcttcagtcgaagacctaagcataattggctgaactttgtgatcaaatatc |
13006472 |
T |
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| Q |
201 |
atgtgttctcta |
212 |
Q |
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| T |
13006473 |
atgtgttctcta |
13006484 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 31280557 - 31280618
Alignment:
| Q |
117 |
taagcttgaataatagaaagatattgtagctgctcttcagtcggagacctaagcataattgg |
178 |
Q |
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| T |
31280557 |
taagcttggataatagaaaggtattgtagctgctatgtagttggagacctaggcataattgg |
31280618 |
T |
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