View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_4 (Length: 463)
Name: NF1313_low_4
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Complemental strand, 20171397 - 20170978
Alignment:
| Q |
30 |
gttgccttaaagcagacaaacatatatgattcgttttgggttccttatacattgcaactttgannnnnnngtgcatctattgtagtacttgcatgatgag |
129 |
Q |
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| T |
20171397 |
gttgccttaaagca--caaacatatatgattcgttttgggttccttagacattgcaactttgatttttttgtgcatgtattgtagtacttgcatgatgag |
20171300 |
T |
|
| Q |
130 |
gtatggtatgccgtatggtctggttgagtgttccnnnnnnnngagaccaaaactttaactgcacacattgtttcttaaataatttcattcctacct-ata |
228 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
20171299 |
gtatggtatgccgtatggtctggctgagtgttccttttttt-gagaccaaaactttaactacacacattgtttcttaaataatttcattcctacctcata |
20171201 |
T |
|
| Q |
229 |
tctctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171200 |
tctctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatata |
20171101 |
T |
|
| Q |
329 |
ggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgttctgtttctccaag |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20171100 |
ggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgctctgtttctccaag |
20171001 |
T |
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| Q |
429 |
atgggtttctctccttgtctctc |
451 |
Q |
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| T |
20171000 |
atgggtttctctccttgtctctc |
20170978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Complemental strand, 44393107 - 44392688
Alignment:
| Q |
30 |
gttgccttaaagcagacaaacatatatgattcgttttgggttccttatacattgcaactttgannnnnnngtgcatctattgtagtacttgcatgatgag |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
44393107 |
gttgccttaaagca--caaacatatatgattcgttttgggttccttagacattgcaactttgatttttttgtgcatgtattgtagtacttgcatgatgag |
44393010 |
T |
|
| Q |
130 |
gtatggtatgccgtatggtctggttgagtgttccnnnnnnnngagaccaaaactttaactgcacacattgtttcttaaataatttcattcctacct-ata |
228 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
44393009 |
gtatggtatgccgtatggtctggctgagtgttccttttttt-gagaccaaaactttaactacacacattgtttcttaaataatttcattcctacctcata |
44392911 |
T |
|
| Q |
229 |
tctctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392910 |
tctctataaaattgcatcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatata |
44392811 |
T |
|
| Q |
329 |
ggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgttctgtttctccaag |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
44392810 |
ggctgagaactccttgttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgctctgtttctccaag |
44392711 |
T |
|
| Q |
429 |
atgggtttctctccttgtctctc |
451 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
44392710 |
atgggtttctctccttgtctctc |
44392688 |
T |
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