View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_40 (Length: 250)
Name: NF1313_low_40
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 50027586 - 50027820
Alignment:
| Q |
5 |
aaattgaaataatcaattgattctgaatcatcaaacattgttacataaatagtttcatcacaattaatnnnnnnnnnttaaaactttaacccagaaaaat |
104 |
Q |
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| T |
50027586 |
aaattgaaataatcaattgattctgaatcatcaaacattgttacataaatagtttcatcacaattaagaaaaaaaaattaaaactttaacccagaaaaat |
50027685 |
T |
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| Q |
105 |
cataggtattgaatgcatgattcaataaacccagaaaaatcaattgattttaaattaaacaacccaacacacattaaattgaacaatcaattgattcaga |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50027686 |
cataggtattgattgcatgattcaataaacccagaaaaatcaattgattttaaattaaacaacccaacacacattaaattgaacaatcaattgattcaga |
50027785 |
T |
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| Q |
205 |
atcaacnnnnnnnnntgttacatggacagtttcat |
239 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
50027786 |
atcaacaaaaaaaaatgttacatggacagtttcat |
50027820 |
T |
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