View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1313_low_5 (Length: 425)

Name: NF1313_low_5
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1313_low_5
NF1313_low_5
[»] chr3 (2 HSPs)
chr3 (30-418)||(47846415-47846800)
chr3 (218-270)||(14778734-14778786)
[»] chr1 (2 HSPs)
chr1 (183-314)||(4686087-4686218)
chr1 (206-248)||(38720066-38720108)
[»] chr4 (1 HSPs)
chr4 (206-274)||(40253987-40254055)
[»] chr2 (1 HSPs)
chr2 (205-267)||(40819427-40819489)
[»] chr7 (2 HSPs)
chr7 (212-248)||(13297808-13297844)
chr7 (217-253)||(33928495-33928531)
[»] chr5 (1 HSPs)
chr5 (206-270)||(5113879-5113943)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 47846800 - 47846415
Alignment:
Q  30 atttgcagcctttatgttactattggaagcaggtaagtgtactatgtatatatcaattttagtgacaacaacatgtatttaatctgaaatatcggtgtat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846800 atttgcagcctttatgttactattggaagcaggtaagtgtactatgtatatatcaattttagtgacaacaacatgtatttaatctgaaatatcggtgtat 47846701  T
Q  130 aaagcaaaacaattatgcttattaatttcggtttaatttgtttgatgccgcgcgcagatggtcggtgattgcgggtcaattgccgggaagaaccgataat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47846700 aaagcaaaacaattatgcttattaatttcggtttaatttgtttgatgccgcgcgcagatggtcggtgattgcgggtcaattgcccggaagaaccgataat 47846601  T
Q  230 gatataaagaactattggaacacaaaactgaaaaagaagcttttagggaagcatcgtaaagaacaacaattacaagcacgtaataaattattagctagtg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846600 gatataaagaactattggaacacaaaactgaaaaagaagctttttgggaagcatcgtaaagaacaacaattacaagcacgtaataaattattagctagtg 47846501  T
Q  330 ctaatcatgagagcaatggaagaaggagtgatcagaattcttcatctaatttaatttctgatcaacatattttacaaccatattgttgg 418  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846500 ctaatcatgagagcaatggaagaaggagtg---agaattcttcatctaatttaatttctgatcaacatattttacaaccatattgttgg 47846415  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 14778786 - 14778734
Alignment:
Q  218 agaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagct 270  Q
    ||||| || |||||| | |||||| ||||||||||||| ||||||||||||||    
T  14778786 agaacagacaatgatgttaagaacaattggaacacaaagctgaaaaagaagct 14778734  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 4686087 - 4686218
Alignment:
Q  183 gcagatggtcggtgattgcgggtcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagcttttagggaagca 282  Q
    |||| |||||| | ||||| | ||||||||| |||||||| |||||||| ||||||||||||||||| ||||   |||||||||||||||| ||||| ||    
T  4686087 gcaggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagcttttggggaaaca 4686186  T
Q  283 tcgtaaagaacaacaattacaagcacgtaata 314  Q
     |||||||| ||||||  ||||||||||||||    
T  4686187 ccgtaaagatcaacaacaacaagcacgtaata 4686218  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 38720066 - 38720108
Alignment:
Q  206 caattgccgggaagaaccgataatgatataaagaactattgga 248  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||    
T  38720066 caattaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 40254055 - 40253987
Alignment:
Q  206 caattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagctttta 274  Q
    ||||| || ||| |||| ||||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  40254055 caattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaactttta 40253987  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 40819489 - 40819427
Alignment:
Q  205 tcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaa 267  Q
    |||||| || |||||||| ||||||||||| || ||||| |||||||||||||| || |||||    
T  40819489 tcaattaccaggaagaactgataatgatatcaaaaactactggaacacaaaactaaagaagaa 40819427  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 13297808 - 13297844
Alignment:
Q  212 ccgggaagaaccgataatgatataaagaactattgga 248  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  13297808 ccgggaagaaccgataatgagataaagaactactgga 13297844  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 33928531 - 33928495
Alignment:
Q  217 aagaaccgataatgatataaagaactattggaacaca 253  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  33928531 aagaacagataatgatataaagaattattggaacaca 33928495  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 5113879 - 5113943
Alignment:
Q  206 caattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagct 270  Q
    ||||| || ||| |||| |||||||||||||||||||| |||||||| |  ||||| ||||||||    
T  5113879 caattaccaggacgaacggataatgatataaagaactactggaacactaggctgaagaagaagct 5113943  T

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