View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_low_6 (Length: 417)
Name: NF1313_low_6
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 98 - 408
Target Start/End: Original strand, 41807030 - 41807341
Alignment:
| Q |
98 |
catctagctcaaaaatgtgattgagatttacaaagcttaagtcattttttagtaaaactcattgttcaatctgttcagctatgaaaatgaataacagttg |
197 |
Q |
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| T |
41807030 |
catctagctcaaaaatgtgattgagatttacaaagcttaagccattttttagtaaaactcattgttcaatctgttcagctatgaaaatgaataacagttg |
41807129 |
T |
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| Q |
198 |
catagaaagcttagctgttcctttactgacacannnnnnnnncttcatttccttgtatatcttataaaaatacagctgaccttgtttgatatcccataat |
297 |
Q |
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| T |
41807130 |
catagaaagattagctgttcctttactgacacatttttttttcttcatttccttgtatatcttataaaaatacagctgactttgtttgatatcccataat |
41807229 |
T |
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| Q |
298 |
attaaaaagaaaaaccatttatcttaagggcccaaagtgaaagatatttacagcttaattagaatagacgtaatggaaataatttgaacacaacttaaa- |
396 |
Q |
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| T |
41807230 |
attaaaaagaaaaaccatttatcttaagggcccaaagtgaaagatatttacagcttaattagaatagacgtaatggaaataatttgaacacaacttaaag |
41807329 |
T |
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| Q |
397 |
agatagaataat |
408 |
Q |
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| T |
41807330 |
agatagcataat |
41807341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 396
Target Start/End: Complemental strand, 42031501 - 42031353
Alignment:
| Q |
241 |
ttcatttccttgtatatcttataaaaatacagctgaccttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaag |
340 |
Q |
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| T |
42031501 |
ttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatattta----aaaaatcatctatctta--gggccaaagtgaaag |
42031408 |
T |
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| Q |
341 |
atatttacagcttaattagaatagacgtaatggaaataatttgaacacaacttaaa |
396 |
Q |
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| T |
42031407 |
agttttttagtttacttacaactgacgtaatggaaataa-gtgaacacaacttaaa |
42031353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 42031616 - 42031569
Alignment:
| Q |
159 |
ttgttcaatctgttcagctatgaaaatgaataacagttgcatagaaag |
206 |
Q |
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| T |
42031616 |
ttgttcaatatgttcagctatgaaactgaataacagttgaatagaaag |
42031569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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