View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314-Insertion-1 (Length: 372)
Name: NF1314-Insertion-1
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314-Insertion-1 |
 | |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 28327515 - 28327214
Alignment:
| Q |
28 |
aggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcatctcccttccaatcgacctcc |
127 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||| ||| || |
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| T |
28327515 |
aggaaaatatttaggacctttggaaaagctaccattcttaacaataagtgttttaaggttttgcatcttcttgagttcatctcccttccaatctaccacc |
28327416 |
T |
|
| Q |
128 |
tcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacggatg----aaaaacacaaatcaaccgaaatac---ata |
220 |
Q |
| |
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| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || | | ||||||||||||||||| || | ||| |
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|
| T |
28327415 |
ttttgctcagatgacgggaattccaaatatataatttcaattttacttgatcccttaaagcgcaagaaaaaaaaacacaaatcaaccatgattcataata |
28327316 |
T |
|
| Q |
221 |
catgtatatatgttacgaattaaacacatttatttatagaaatttacatattataacagaataaaaaagtgtagcataaacattaataggattagtaaaa |
320 |
Q |
| |
|
|||| |||||||||| |||| |||||| | ||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28327315 |
tatgtgtatatgttacaaattgaacacactaattaagataaatttacatattataagggaataaaaaagtgtagcataaacattaataggattagtaaaa |
28327216 |
T |
|
| Q |
321 |
aa |
322 |
Q |
| |
|
|| |
|
|
| T |
28327215 |
aa |
28327214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 28505151 - 28504850
Alignment:
| Q |
28 |
aggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcatctcccttccaatcgacctcc |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||| ||| || |
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|
| T |
28505151 |
aggaaaatatttaggacctttggaaaagctaccattcttaacaataagtgttttaaggttttgcatcttcttgagttcatctcccttccaatctaccacc |
28505052 |
T |
|
| Q |
128 |
tcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacggatg----aaaaacacaaatcaaccgaaatac---ata |
220 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || | | ||||||||||||||||| || | ||| |
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|
| T |
28505051 |
ttttgctcagatgacgggaattccaaatatataatttcaattttacttgatcccttaaagcgcaagaaaaaaaaacacaaatcaaccatgattcataata |
28504952 |
T |
|
| Q |
221 |
catgtatatatgttacgaattaaacacatttatttatagaaatttacatattataacagaataaaaaagtgtagcataaacattaataggattagtaaaa |
320 |
Q |
| |
|
|||| |||||||||| |||| |||||| | ||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28504951 |
tatgtgtatatgttacaaattgaacacactaattaagataaatttacatattataagggaataaaaaagtgtagcataaacattaataggattagtaaaa |
28504852 |
T |
|
| Q |
321 |
aa |
322 |
Q |
| |
|
|| |
|
|
| T |
28504851 |
aa |
28504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 28236513 - 28236330
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
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|
| T |
28236513 |
tccaatactctcaaactattaggaagataattaggacctttggaaaaggtaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcat |
28236414 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacgga |
191 |
Q |
| |
|
||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
28236413 |
ctcccttccaatctatcacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaagcgga |
28236330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 28295914 - 28296092
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||| |
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|
| T |
28295914 |
tccaatactctcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagctcat |
28296013 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa |
186 |
Q |
| |
|
|||||||||| || | | ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
28296014 |
ctcccttccattctatcacctcttcctcagataacgggaattccaaatatataatttcaatttgacttgatcccttaaa |
28296092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 28516159 - 28515981
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||| |
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|
| T |
28516159 |
tccaatactctcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagctcat |
28516060 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa |
186 |
Q |
| |
|
|||||||||| || | | ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
28516059 |
ctcccttccattctatcacctcttcctcagataacgggaattccaaatatataatttcaatttgacttgatcccttaaa |
28515981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 28244885 - 28244707
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||| |||| |||||| || ||||||| |
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|
| T |
28244885 |
tccaatactctcagactgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgttttgaggttttccatcttcttcagttcat |
28244786 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa |
186 |
Q |
| |
|
|||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
28244785 |
ctccctcccaatctaccacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaa |
28244707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 28187405 - 28187226
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||| | ||||||| |
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|
| T |
28187405 |
tccaatactctcaaactgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgttttgagcttttgcatcttctccagttcat |
28187306 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaa |
187 |
Q |
| |
|
||||||||||||| || || ||| |||| |||||| | |||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
28187305 |
ctcccttccaatctactaccactttctcagatgacgagcattccaaatatataatttcaatttcacttgatcccttaaaa |
28187226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 56477 - 56676
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
56477 |
tccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcat |
56576 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacggatgaaaaacacaaatca |
207 |
Q |
| |
|
||||||||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||| |||| |
|
|
| T |
56577 |
ctcccttccaatctaccacctctttctcacataacgggaattccaaatatataatttcaatttcacttgatcccttaaagcgga-aaaaaacacatatca |
56675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 36675 - 36492
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
36675 |
tccaatactctcaaactattaggaagataattaggacctttggaaaaggtaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcat |
36576 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaaacgga |
191 |
Q |
| |
|
||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
36575 |
ctcccttccaatctatcacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaagcgga |
36492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 45047 - 44869
Alignment:
| Q |
8 |
tccaatactttcaaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttgagttcat |
107 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||| |||| |||||| || ||||||| |
|
|
| T |
45047 |
tccaatactctcagactgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgttttgaggttttccatcttcttcagttcat |
44948 |
T |
|
| Q |
108 |
ctcccttccaatcgacctcctcttcctcaaatgacgggaattccaaatatataatttcaattttatttgatcccttaaa |
186 |
Q |
| |
|
|||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
44947 |
ctccctcccaatctaccacctcttcctcagatgacgggaattccaaatatataatttcaatttcacttgatcccttaaa |
44869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 16693097 - 16693016
Alignment:
| Q |
20 |
aaactgttaggaagatatttaggacctttggaaaagctaccattcttaacaataattgttttgagattttgcatctttttga |
101 |
Q |
| |
|
||||| || ||||||| ||| || |||||||||||| ||||||||||| ||||| ||||||||| ||| |||||| |||| |
|
|
| T |
16693097 |
aaactatttggaagatgttttggtcctttggaaaagtgaccattcttaataataagtgttttgaggtttatcatcttcttga |
16693016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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