View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314-Insertion-2 (Length: 234)

Name: NF1314-Insertion-2
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314-Insertion-2
NF1314-Insertion-2
[»] chr3 (2 HSPs)
chr3 (7-233)||(25516758-25516981)
chr3 (97-213)||(21156297-21156410)
[»] chr4 (4 HSPs)
chr4 (132-209)||(37781762-37781839)
chr4 (133-214)||(873632-873713)
chr4 (132-206)||(54867082-54867157)
chr4 (130-193)||(3991920-3991984)
[»] chr2 (12 HSPs)
chr2 (97-206)||(2869818-2869927)
chr2 (96-223)||(3277869-3277993)
chr2 (130-216)||(28770888-28770974)
chr2 (98-233)||(16388568-16388702)
chr2 (138-216)||(5699691-5699769)
chr2 (125-193)||(8390286-8390354)
chr2 (94-184)||(16388312-16388399)
chr2 (130-186)||(39482828-39482884)
chr2 (136-209)||(20522124-20522196)
chr2 (132-193)||(23078608-23078669)
chr2 (82-193)||(13569181-13569289)
chr2 (130-226)||(18674505-18674600)
[»] chr6 (6 HSPs)
chr6 (40-228)||(30519123-30519307)
chr6 (130-212)||(28301082-28301164)
chr6 (130-212)||(28510909-28510991)
chr6 (154-233)||(33721656-33721735)
chr6 (132-193)||(22963599-22963660)
chr6 (132-193)||(23824733-23824794)
[»] chr5 (4 HSPs)
chr5 (97-213)||(5611010-5611123)
chr5 (100-226)||(30899728-30899854)
chr5 (82-211)||(34842457-34842582)
chr5 (99-210)||(28537489-28537604)
[»] chr1 (4 HSPs)
chr1 (132-206)||(29651710-29651784)
chr1 (130-205)||(48382607-48382683)
chr1 (149-216)||(32737110-32737177)
chr1 (138-216)||(35109649-35109727)
[»] scaffold0076 (1 HSPs)
scaffold0076 (154-205)||(16114-16165)
[»] chr7 (3 HSPs)
chr7 (130-193)||(46516447-46516510)
chr7 (97-212)||(28617343-28617457)
chr7 (130-206)||(2647820-2647896)
[»] chr8 (3 HSPs)
chr8 (119-209)||(6813567-6813658)
chr8 (135-192)||(5990699-5990756)
chr8 (165-218)||(34477330-34477383)
[»] scaffold0148 (1 HSPs)
scaffold0148 (132-206)||(10628-10702)
[»] scaffold0006 (1 HSPs)
scaffold0006 (132-206)||(2392-2465)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 25516758 - 25516981
Alignment:
Q  7 acaaactactacaactacattattaatagaatttgttgtgaattggaacaggtaattataccaataaatctttattgtgttgagtagagaaagtagtaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  25516758 acaaactactacaactacattattaatagaatttgttgtgaatttgaactggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaat 25516857  T
Q  107 caataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 206  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  25516858 caataagtaaagtagtctcaaat---aacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataag 25516954  T
Q  207 aaagaagagagggaaaacaacatacca 233  Q
    |||||||||||||||||||||| ||||    
T  25516955 aaagaagagagggaaaacaacacacca 25516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 21156297 - 21156410
Alignment:
Q  97 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 196  Q
    |||||||||||||| ||||||||||||| ||  ||||| || |||||| ||   || |||||| ||| |||||||||||||| ||| |||||||||| ||    
T  21156297 aagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaa---acctagatctaagagtgaaacaacaccataagaatattcaaagcaa 21156393  T
Q  197 caaggataagaaagaag 213  Q
    ||| |||||||||||||    
T  21156394 caaagataagaaagaag 21156410  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 37781762 - 37781839
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 209  Q
    |||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  37781762 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 37781839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 873713 - 873632
Alignment:
Q  133 aacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaaga 214  Q
    ||||||||||| |||  |||||| ||| ||||||||||||||||||||| ||||||||||  ||| | ||||||||| ||||    
T  873713 aacaacaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaaga 873632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 54867082 - 54867157
Alignment:
Q  132 caacaacaacaaaaaat-agacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 206  Q
    ||||||||||||||||  |||| |||||| ||||||  | |||||||||||||||| ||||||||| || ||||||    
T  54867082 caacaacaacaaaaaaacagacatagatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataag 54867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 3991920 - 3991984
Alignment:
Q  130 aacaacaacaacaaaaaataga-cttagatcgaagtgtgaaacaacaccacaagcatattcaaag 193  Q
    |||||||||||||| ||| | | |||||||| ||||||||| |||||| ||||||||||| ||||    
T  3991920 aacaacaacaacaacaaacaaagcttagatctaagtgtgaagcaacactacaagcatatttaaag 3991984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 2869927 - 2869818
Alignment:
Q  97 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 196  Q
    ||||||| |||||| ||||||||||  ||||| |||||||||||||| |||||||| || ||| ||||||  | |||||||| |||||||||||||| ||    
T  2869927 aagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaa 2869828  T
Q  197 caaggataag 206  Q
    ||| ||||||    
T  2869827 caaagataag 2869818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 3277869 - 3277993
Alignment:
Q  96 aaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagta 195  Q
    ||||||||||||||| || |||||| || |||  ||||||||||||   |||||||  |||||| ||||||||| |||||| |||| ||||||||||| |    
T  3277869 aaagtagtaatcaattagcaaagtaatcacaagaaacaacaacaac---aaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagca 3277965  T
Q  196 acaaggataagaaagaagagagggaaaa 223  Q
    | || ||||||||| |||||||||||||    
T  3277966 aaaaagataagaaataagagagggaaaa 3277993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 28770974 - 28770888
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 216  Q
    ||||||||| |||| |||||||| |||||| ||||||||| |||||||||||||||| |||||| || ||  |||| ||||||||||    
T  28770974 aacaacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagaga 28770888  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 16388702 - 16388568
Alignment:
Q  98 agtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaac 197  Q
    ||||||||||||| ||||||||||||||||  | || ||||||||| ||| |||| |||||  | ||||||| |||||| | |||||||| ||||| ||     
T  16388702 agtagtaatcaatgagtaaagtagtctcaagcagcagcaacaacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaat 16388603  T
Q  198 aaggataagaaagaagagagggaaaacaacatacca 233  Q
    || ||||||| |||| ||  ||||||||||| ||||    
T  16388602 aaagataagagagaa-aggaggaaaacaacacacca 16388568  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 5699691 - 5699769
Alignment:
Q  138 caacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 216  Q
    |||||| |||||||| |||||| |||||| || ||||||||||||| ||||||||| | ||| ||||||| | ||||||    
T  5699691 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaacgataagataaaagaga 5699769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 8390354 - 8390286
Alignment:
Q  125 caaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 193  Q
    |||| |||||||||||||||||  |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  8390354 caaacaacaacaacaacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaag 8390286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 16388312 - 16388399
Alignment:
Q  94 agaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagca 184  Q
    ||||||||||||||||| | ||||||||||||||  | ||||||||||||| ||   || || ||  |||||||||||||||| |||||||    
T  16388312 agaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaaacaa---acatatatataagtgtgaaacaacactacaagca 16388399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 39482828 - 39482884
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcata 186  Q
    |||||||||||||||||| |||| || ||| ||||||  ||||||||||||||||||    
T  39482828 aacaacaacaacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcata 39482884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 20522124 - 20522196
Alignment:
Q  136 aacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 209  Q
    |||||||||||| |||| |||||| ||||||  | |||||||||||||||| |||||| || || |||||||||    
T  20522124 aacaacaaaaaa-agacatagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaa 20522196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 23078669 - 23078608
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 193  Q
    |||||||||||||||| | || |||||| ||||||  | |||||||||||||||| ||||||    
T  23078669 caacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataatcaaag 23078608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 13569181 - 13569289
Alignment:
Q  82 tgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaa 181  Q
    ||||| ||||| || |||| |||||||||  ||||||| ||||| ||  ||||||||||||||||| || |||||||| |||| |  |  ||||||||||    
T  13569181 tgtgtggagtaaaggaagtggtaatcaatgtgtaaagt-gtctccaa--acaacaacaacaaaaaacaggcttagatctaagtatagagaaacaccacaa 13569277  T
Q  182 gcatattcaaag 193  Q
    ||||| ||||||    
T  13569278 gcataatcaaag 13569289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 18674600 - 18674505
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaa 226  Q
    ||||||||||| || ||| |||| |||||  |||||||||  |||||||| ||||||||| ||  ||||| ||||||||| ||||||  ||||||||    
T  18674600 aacaacaacaataacaaacagacctagatttaagtgtgaagtaacaccacgagcatattcgaaacaacaaagataagaaa-aagagaaagaaaacaa 18674505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 30519307 - 30519123
Alignment:
Q  40 tgttgtgaattggaacaggtaattataccaataaatctttattgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaaca 139  Q
    ||||||||| | |||||  |||| |||||||||||| || | ||||| ||| | ||||| ||||||||||| |  ||| ||||||||||   ||||||||    
T  30519307 tgttgtgaaattgaacaaataatcataccaataaat-ttaaatgtgtggagcaaagaaaatagtaatcaatgatcaaaatagtctcaaa---caacaaca 30519212  T
Q  140 acaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaaca 228  Q
    |||| ||| | | ||||||  ||||||||| |||||||| || |||||| |||| ||||| ||||||||| ||||||  ||||||||||    
T  30519211 acaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaagataagaaataagagaaagaaaacaaca 30519123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 28301164 - 28301082
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaa 212  Q
    |||||||| ||||| ||| | || |||||||||||||||| |||||| |||| ||||||||||| ||||  ||||||||||||    
T  28301164 aacaacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28301082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 28510909 - 28510991
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaa 212  Q
    |||||||| ||||| ||| | || |||||||||||||||| |||||| |||| ||||||||||| ||||  ||||||||||||    
T  28510909 aacaacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28510991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 33721735 - 33721656
Alignment:
Q  154 tagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatacca 233  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||| ||||||| ||||  || | ||||||||| ||||    
T  33721735 tagatctaagtgtgaaacatcaccacaaacatattcaaagcaacaaagataagagagaaaggaagaaaaacaacacacca 33721656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 22963599 - 22963660
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 193  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  22963599 caacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 22963660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 23824794 - 23824733
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 193  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  23824794 caacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 23824733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 5611010 - 5611123
Alignment:
Q  97 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 196  Q
    |||||||||||||| ||||||||||||| ||  ||||| || |||||| ||   || |||||| ||| |||||||||||||| ||| |||||||||| ||    
T  5611010 aagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaa---acctagatctaagagtgaaacaacaccataagaatattcaaagcaa 5611106  T
Q  197 caaggataagaaagaag 213  Q
    ||| |||||||||||||    
T  5611107 caaagataagaaagaag 5611123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 30899728 - 30899854
Alignment:
Q  100 tagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaa 199  Q
    ||||||||||| || ||||||| |||||  |||||||||||||| | |||||| |||||| |||||| || |||||||||||| |||  ||||  |||||    
T  30899728 tagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaagtgttaagcaacaccacaagtataaccaaaacaacaa 30899827  T
Q  200 ggataagaaagaagagagggaaaacaa 226  Q
     ||||  |||||||||| | |||||||    
T  30899828 agatacaaaagaagagaagaaaaacaa 30899854  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 34842457 - 34842582
Alignment:
Q  82 tgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaa 181  Q
    ||||| ||||| || ||||||||||||| | ||||||||| |||||  | ||||||||| ||| ||   || |||||| ||||||||| |||||||||||    
T  34842457 tgtgtggagtaaaggaagtagtaatcaaga-gtaaagtagcctcaagcagcaacaacaataaacaa---acctagatctaagtgtgaagcaacaccacaa 34842552  T
Q  182 gcatattcaaagtaacaaggataagaaaga 211  Q
    |||||| | ||| ||||| |||||||||||    
T  34842553 gcatatccgaagcaacaaagataagaaaga 34842582  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 28537489 - 28537604
Alignment:
Q  99 gtagtaatcaataagtaaagtagtctcaa---ataacaacaacaac-aaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagt 194  Q
    |||||||||||| ||||||||||||||||   | |||||||||||| |||||| |||| || ||| |||||| ||||| |||||||| |||| ||||| |    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaacaacaacaaaaaaacagacata-atctaagtgtaaaacagcaccacaaacataatcaaaat 28537587  T
Q  195 -aacaaggataagaaag 210  Q
     ||||| ||||||||||    
T  28537588 caacaaagataagaaag 28537604  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 29651710 - 29651784
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 206  Q
    |||||||||||||||| ||||||||||| ||||||  | |||||||||||||||| |||||| || || ||||||    
T  29651710 caacaacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 29651784  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 48382683 - 48382607
Alignment:
Q  130 aacaacaac-aacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataa 205  Q
    ||||||||| || ||||||||||| |||||| ||||||||| ||||||||||| |||| | |||| ||||| |||||    
T  48382683 aacaacaaccaaaaaaaaatagacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 32737177 - 32737110
Alignment:
Q  149 agacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 216  Q
    ||||||||||| ||||||||| |||||||||||  ||| ||||||  |||| || |||||||||||||    
T  32737177 agacttagatctaagtgtgaagcaacaccacaaatataatcaaagctacaatgaaaagaaagaagaga 32737110  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 35109727 - 35109649
Alignment:
Q  138 caacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 216  Q
    |||||| ||| |||| |||||| ||||| | ||||||||||||| |||| | |||| ||||| || |||||||||||||    
T  35109727 caacaacaaacagacctagatctaagtgcggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagaga 35109649  T

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Target: scaffold0076 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 16165 - 16114
Alignment:
Q  154 tagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataa 205  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| |||||    
T  16165 tagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataa 16114  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 46516510 - 46516447
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 193  Q
    |||||||||||||||||| ||||||| ||| |||||| || |||||||| ||||||| ||||||    
T  46516510 aacaacaacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaag 46516447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 28617457 - 28617343
Alignment:
Q  97 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaa-caacaccacaagcatattcaaagta 195  Q
    |||| ||||||||| |||||||||| |||||  ||||| ||||||||||  ||||| ||  ||  || || ||| ||||||||||||||||||||||| |    
T  28617457 aagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaa--tagacctaagtcttagagtaaaagcaacaccacaagcatattcaaagca 28617360  T
Q  196 acaaggataagaaagaa 212  Q
    |||| |||||| |||||    
T  28617359 acaaagataagcaagaa 28617343  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 2647896 - 2647820
Alignment:
Q  130 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 206  Q
    |||||||||||||||||| |||| || ||| |||| |  | |||||||||||||||| |||||| || || ||||||    
T  2647896 aacaacaacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataag 2647820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 6813567 - 6813658
Alignment:
Q  119 tagtctcaaataacaacaacaacaa-aaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 209  Q
    |||||||||  |||||||||||||| ||||||||||||  ||  |||||  ||||||| |||||||||| |||||| || || |||||||||    
T  6813567 tagtctcaatcaacaacaacaacaacaaaatagacttaagtcttagtgtagaacaacatcacaagcataatcaaagcaataaagataagaaa 6813658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 5990756 - 5990699
Alignment:
Q  135 caacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaa 192  Q
    ||||||||| |||||||| || ||| ||||||  ||||| ||||||||||||||||||    
T  5990756 caacaacaacaaatagacctaaatctaagtgtagaacaaaaccacaagcatattcaaa 5990699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 34477383 - 34477330
Alignment:
Q  165 gtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagg 218  Q
    |||||||||||| |||| |||| |||||| || || ||||||||||||||||||    
T  34477383 gtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaagagagg 34477330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 10628 - 10702
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 206  Q
    |||||||||||||||| |||| || ||| ||||||  | |||||||||||||||| |||||| || || ||||||    
T  10628 caacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 10702  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 2392 - 2465
Alignment:
Q  132 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 206  Q
    |||||||||||||||  |||| |||||| ||||||  |||||||||||||||||| |||||| || || ||||||    
T  2392 caacaacaacaaaaac-agacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataag 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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