View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314-Insertion-3 (Length: 297)
Name: NF1314-Insertion-3
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 32461183 - 32460924
Alignment:
| Q |
8 |
ttatggtggtcgcgctggtgattacatacatgcttcattgatttttgtagaaggaaattccagaatatttttgtatatgtaattattattgatgaaattt |
107 |
Q |
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| T |
32461183 |
ttatggtggtcgcgctggtgattacatacatgcttcattgatttttgtagaaggaaactccagaatatttttgtatatgtaattattattgatgaaattt |
32461084 |
T |
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| Q |
108 |
agtattaataatattcttttgatacactaattaccttcttgtgctttcaaaagttcttaagttcaactttacattcttttccaaacgcgtgagatttcta |
207 |
Q |
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| T |
32461083 |
agtattaataatattcttttgatacattaatttccttcttgtgctttcaaaagttcataagttcaactttacattcttttccaaacgcgtgagatttcta |
32460984 |
T |
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| Q |
208 |
ggtcaaaagaaaacgtgtaaattttagctaaagtttctatattaatgtcacgttatcgat |
267 |
Q |
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| T |
32460983 |
ggtcaaaagaaaacgtgtaaatcttagctaaagtttctatatgaatgtcacgttatcgat |
32460924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 32456633 - 32456556
Alignment:
| Q |
48 |
atttttgtagaaggaaattccagaatatttttgtatatgtaattattattgatgaaatttagtattaataatattcttt |
126 |
Q |
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| T |
32456633 |
attttagtagaaggaaatttcaga-tatttttgtatatgtaattattattgatgaaatttagtgttaataatattcttt |
32456556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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