View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314-Insertion-5 (Length: 417)

Name: NF1314-Insertion-5
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314-Insertion-5
NF1314-Insertion-5
[»] chr7 (8 HSPs)
chr7 (61-383)||(46002213-46002544)
chr7 (61-342)||(31211372-31211648)
chr7 (272-401)||(31211605-31211729)
chr7 (300-381)||(9745802-9745883)
chr7 (300-407)||(8312332-8312442)
chr7 (300-417)||(13170001-13170122)
chr7 (340-402)||(3387938-3388000)
chr7 (327-376)||(65494-65543)
[»] chr3 (11 HSPs)
chr3 (272-401)||(11649916-11650045)
chr3 (303-407)||(19544079-19544182)
chr3 (303-381)||(40888086-40888164)
chr3 (307-407)||(52640768-52640868)
chr3 (327-376)||(10051160-10051209)
chr3 (304-381)||(29454257-29454333)
chr3 (300-396)||(15989840-15989943)
chr3 (330-376)||(3415562-3415608)
chr3 (221-342)||(11650030-11650150)
chr3 (303-376)||(8655646-8655718)
chr3 (275-342)||(11650002-11650069)
[»] chr8 (10 HSPs)
chr8 (61-171)||(24423499-24423609)
chr8 (300-407)||(9817662-9817769)
chr8 (303-413)||(9884345-9884456)
chr8 (300-396)||(24423752-24423848)
chr8 (276-365)||(29115128-29115217)
chr8 (300-381)||(42076985-42077066)
chr8 (300-381)||(21231333-21231414)
chr8 (241-338)||(24423666-24423763)
chr8 (327-376)||(24499435-24499484)
chr8 (300-342)||(21231484-21231525)
[»] chr2 (8 HSPs)
chr2 (300-417)||(22404409-22404527)
chr2 (300-407)||(16329515-16329622)
chr2 (300-407)||(29045921-29046027)
chr2 (271-407)||(16130520-16130654)
chr2 (304-381)||(27976609-27976686)
chr2 (304-381)||(28063137-28063214)
chr2 (331-376)||(19713967-19714012)
chr2 (330-376)||(19704373-19704419)
[»] chr4 (5 HSPs)
chr4 (300-417)||(18286156-18286274)
chr4 (300-381)||(41942548-41942629)
chr4 (300-381)||(41951570-41951651)
chr4 (323-379)||(31518544-31518600)
chr4 (300-381)||(10335527-10335608)
[»] scaffold0016 (1 HSPs)
scaffold0016 (300-407)||(108482-108588)
[»] chr1 (7 HSPs)
chr1 (303-381)||(13379540-13379618)
chr1 (300-381)||(51442929-51443010)
chr1 (303-376)||(2269107-2269179)
chr1 (303-367)||(24302522-24302586)
chr1 (326-376)||(11917681-11917731)
chr1 (330-376)||(20600967-20601013)
chr1 (319-372)||(42833923-42833976)
[»] scaffold0022 (1 HSPs)
scaffold0022 (301-381)||(2617-2697)
[»] chr6 (5 HSPs)
chr6 (217-315)||(21857752-21857848)
chr6 (327-376)||(22625553-22625602)
chr6 (327-376)||(29955031-29955080)
chr6 (272-376)||(21857833-21857937)
chr6 (331-376)||(12492291-12492336)
[»] scaffold0028 (1 HSPs)
scaffold0028 (303-377)||(147936-148010)
[»] scaffold0150 (1 HSPs)
scaffold0150 (303-377)||(35304-35378)
[»] chr5 (2 HSPs)
chr5 (327-376)||(31094964-31095013)
chr5 (114-225)||(18926797-18926908)
[»] scaffold1028 (1 HSPs)
scaffold1028 (327-376)||(1373-1422)
[»] scaffold0631 (1 HSPs)
scaffold0631 (327-376)||(4841-4890)
[»] scaffold0057 (1 HSPs)
scaffold0057 (327-376)||(76039-76088)
[»] scaffold0224 (1 HSPs)
scaffold0224 (319-372)||(21003-21056)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 61 - 383
Target Start/End: Complemental strand, 46002544 - 46002213
Alignment:
Q  61 ttgattttgtctttagaggttttgagaaattttattaatttcgaggtgt-ggtgattttgtggagttgataagctatgtgatttgagaatataaaactac 159  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||  |||||||||||||||||     
T  46002544 ttgattttgtcctcagaggttttgagaaattttattaattt-gaggtgttggtgattttgtggagttgataagttacgtgccttgagaatataaaactaa 46002446  T
Q  160 aaagatttgaag-gaa-aaatacattgcattcatagcatggcatataatagtgtcataggtgtcaaatagggcgattcttattcatgtgccaattagggc 257  Q
    ||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||  |||||||||| |||||||||    
T  46002445 aaagagttggagagaacaaatacattgcattcatagcattgcatataatagtgtcataagtgtcaaatggggcgattcacattcatgtgctaattagggc 46002346  T
Q  258 gattcgtttgcatg--------tgccaaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattggggcgatatccgga 349  Q
     |||| | | ||||        || |||||| || |||||||| | |||||| | ||| |||||||||| | ||||||||||||||||||||||||  ||    
T  46002345 aattcatattcatgtgtcattttgtcaaatgtggtgattaaaact-attttgtcgaatagggcgattaaaagtattatgccaattggggcgatatctaga 46002247  T
Q  350 tcatggtctagttgcatttcatgcatctgcatta 383  Q
    ||||||||||||||||||||||||||||||||||    
T  46002246 tcatggtctagttgcatttcatgcatctgcatta 46002213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 31211372 - 31211648
Alignment:
Q  61 ttgattttgtctttagaggttttgagaaattttattaatttc-gaggtgtggtgattttgtggagttgataa---gctatgtgatttgagaatataaaac 156  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||| |||||||   ||||||||| |||||||||||||||    
T  31211372 ttgattttgtctttagaggttttgagaaattttattaattccagaggtgtgctgactttgtggaattgataataagctatgtgacttgagaatataaaac 31211471  T
Q  157 tacaaagatttgaaggaaaaatacattgcattcatagcatggcatataatagtgtcataggtgtcaaatagggcgattcttattcatgtgccaattaggg 256  Q
    || |||||||||||| ||||||||||||||||||||||          ||||||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  31211472 tataaagatttgaagaaaaaatacattgcattcatagc----------atagtgtcataagtgtcaaatggggcgattcttattcatgtgtcaattaggg 31211561  T
Q  257 cgattcgtttgca-tgtgccaaatggggcgattaaaaatcattttgccaaatggggcgatt-aatattattatgccaattggggcgat 342  Q
    |||||| | |||| | || |||||||||| ||| |||||  |||||||||||||| ||||| || |||||| |||||| ||| |||||    
T  31211562 cgattcatatgcattttgtcaaatggggcaatt-aaaattgttttgccaaatgggacgattaaaaattattttgccaaatggagcgat 31211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 401
Target Start/End: Original strand, 31211605 - 31211729
Alignment:
Q  272 tgccaaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcat 371  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| ||||||||    |||||||||| ||||||||||||||||||||    
T  31211605 tgccaaatgggacgattaaaaattattttgccaaatggagcgatta-tattgttataccaattgg----atatccggattatggtctagttgcatttcat 31211699  T
Q  372 gcatctgcattaacattaagtcttgagtct 401  Q
    ||||||||||||||||| ||||||| ||||    
T  31211700 gcatctgcattaacattgagtcttgtgtct 31211729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 9745802 - 9745883
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  9745802 tgccaaatggggcgattaaaactattatgtcaattgaggcgatatccagatcatggtctatttgcatttcatgcatctgcat 9745883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 8312332 - 8312442
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctg---cattaacattaagtcttg 396  Q
    ||||||||| || |||||| | | ||||||||||||||| |||||||| ||||||||||| || ||||| |||||||||   ||| |||||| |||||||    
T  8312332 tgccaaatgtggtgattaaaactcttatgccaattggggagatatccgaatcatggtctatttacatttaatgcatctgcatcatcaacattgagtcttg 8312431  T
Q  397 agtcttgtgtt 407  Q
     ||||||||||    
T  8312432 ggtcttgtgtt 8312442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 13170001 - 13170122
Alignment:
Q  300 tgccaaatggggcgattaat-attattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctg---cattaacattaagtctt 395  Q
    |||||||||||||||||  | ||||| ||||||| |||||||||||||||||||  ||||| | ||||||||||||||||   ||| |||||| ||| ||    
T  13170001 tgccaaatggggcgattctttattat-atgccaaatggggcgatatccggatcacagtctattagcatttcatgcatctgcatcatcaacattgagtatt 13170099  T
Q  396 gagtcttgtg-ttgttcttgtag 417  Q
    |||||||||| ||||||||||||    
T  13170100 gagtcttgtgtttgttcttgtag 13170122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 3387938 - 3388000
Alignment:
Q  340 gatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagtctt 402  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||    
T  3387938 gatatccagatcatggtctacttgcatttcatgcatctgcattaccattgagtcttgtgtctt 3388000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 65494 - 65543
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  65494 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 65543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 11650045 - 11649916
Alignment:
Q  272 tgccaaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcat 371  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  11650045 tgccaaatgaggcgattaaaaattattttgccaaatggggcgattaatatttttatgccaattggggtgatatctggatcatggtctagttacatttcat 11649946  T
Q  372 gcatctgcattaacattaagtcttgagtct 401  Q
    ||||||||||||||||| ||||||| ||||    
T  11649945 gcatctgcattaacattcagtcttgtgtct 11649916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 19544182 - 19544079
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagtctt 402  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||| ||| |||||    
T  19544182 caaatggggcgattaaaactattatgccaattggggcgatatccggatcat-gtctactttcatttcatgcatctgcattaacattgagtattgggtctt 19544084  T
Q  403 gtgtt 407  Q
    |||||    
T  19544083 gtgtt 19544079  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 40888164 - 40888086
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  40888164 caaatgaggcgattaaaactattatgccaattggggcgatatccggatcatggtctgtttgcatttcatgcatctgcat 40888086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 52640868 - 52640768
Alignment:
Q  307 tggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagtcttgtgt 406  Q
    |||||||||||| | ||||||||||| |||||||||||| | |||||||| || ||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  52640868 tggggcgattaaaaatattatgccaactggggcgatatctgaatcatggtatatttgcatttcatgcatttgcatcaacattgagtcctgagtcttgtgt 52640769  T
Q  407 t 407  Q
    |    
T  52640768 t 52640768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 10051160 - 10051209
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  10051160 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 10051209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 29454257 - 29454333
Alignment:
Q  304 aaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    |||||||| | |||| | ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  29454257 aaatggggtggttaaaactattatgtcaattggggcgatatgcggatcatggtcta-ttgcatttcatgcatttgcat 29454333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 15989943 - 15989840
Alignment:
Q  300 tgccaaatggggcgattaatat--tattatgccaattggggcgatatccggatcatggtcta-----gttgcatttcatgcatctgcattaacattaagt 392  Q
    |||||| |||||||||||| |   ||||||||||| ||||||||||||||||||||||||||      ||||||| ||||||||||||| |||||| |||    
T  15989943 tgccaactggggcgattaaaaaactattatgccaactggggcgatatccggatcatggtctacttgcattgcattccatgcatctgcatcaacattgagt 15989844  T
Q  393 cttg 396  Q
    ||||    
T  15989843 cttg 15989840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 3415608 - 3415562
Alignment:
Q  330 caattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  3415608 caattggagcgatatccggatcatagtctagttgcatttcatgcatc 3415562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 11650150 - 11650030
Alignment:
Q  221 caaatagggcgattcttattcatgtgccaattagggcgattcgtttgcatgtgccaaatggggcgattaaaaatcattttgccaaatggggcgattaata 320  Q
    ||||| |||||| || |||||||||| ||| | |||||| || | |||||||| ||| |||||||||| ||||| |||||  ||||||||||||| || |    
T  11650150 caaatggggcgagtcatattcatgtgtcaaatggggcgagtcatatgcatgtgtcaattggggcgatt-aaaattattttatcaaatggggcgatgaaaa 11650052  T
Q  321 ttattatgccaattggggcgat 342  Q
    ||||| |||||| || ||||||    
T  11650051 ttattttgccaaatgaggcgat 11650030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 8655646 - 8655718
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    |||||||||||||||| | ||||||| |||||| |  ||||| ||||| |||||||| ||||||||||||||||    
T  8655646 caaatggggcgattaaaactattatgtcaattgagt-gatattcggataatggtctacttgcatttcatgcatc 8655718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 11650069 - 11650002
Alignment:
Q  275 caaatggggcgattaaaaatcattttgccaaatggggcgatt-aatattattatgccaattggggcgat 342  Q
    ||||||||||||| |||| | ||||||||||||| ||||||| || |||||| |||||| |||||||||    
T  11650069 caaatggggcgatgaaaatt-attttgccaaatgaggcgattaaaaattattttgccaaatggggcgat 11650002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 24423499 - 24423609
Alignment:
Q  61 ttgattttgtctttagaggttttgagaaattttattaatttcgaggtgtggtgattttgtggagttgataagctatgtgatttgagaatataaaactaca 160  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||| ||| |||||||| ||||||||||||||||| |    
T  24423499 ttgattttgtctttagagattttgagaaattttattaatttcgaggggtggtaattttgtggaattggtaaactatgtgacttgagaatataaaactata 24423598  T
Q  161 aagatttgaag 171  Q
    |||||||||||    
T  24423599 aagatttgaag 24423609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 9817769 - 9817662
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagt 399  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| | ||||||||    
T  9817769 tgccaaatggggcgattaaaactattatgtcaattggggcgatatccggatcatgatctatttgcatttcatgcatctgcatcaacattgaatcttgagt 9817670  T
Q  400 cttgtgtt 407  Q
    ||||||||    
T  9817669 cttgtgtt 9817662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 413
Target Start/End: Original strand, 9884345 - 9884456
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagtctt 402  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| || ||    
T  9884345 caaatgggacgattaaaactattatgccaattggggcgatatccggatcatggtctatttgcatttcatgcatctgcatcaacattgagtcttgggtttt 9884444  T
Q  403 gtg-ttgttctt 413  Q
    ||| ||||||||    
T  9884445 gtgcttgttctt 9884456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 24423752 - 24423848
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttg 396  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||    
T  24423752 tgccaaatggggtgattaatattgttatgccaaatggggcgatatccggatcatggtatagttgcatttcatgcctctgcattagcattgagtcttg 24423848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 29115217 - 29115128
Alignment:
Q  276 aaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgca 365  Q
    |||||||| |||||||||| |||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  29115217 aaatggggtgattaaaaattattttgccaaatgggatgattaaaattattatgtcaattggggcgatatccggatcatggtctagctgca 29115128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 42077066 - 42076985
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  42077066 tgccaaatgggacgattaaaactattatgccaattggggcgatatccggatcatggtctgtttgcatttcatgcatttgcat 42076985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 21231414 - 21231333
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||| || |||||    
T  21231414 tgccaaatgggacgattaaaactattatgccaattggggcgatatccggatcatgatctatttgcatttcatggatttgcat 21231333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 24423666 - 24423763
Alignment:
Q  241 catgtgccaattaggg-cgattcgtttgcatgtgccaaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattgggg 338  Q
    |||||||||||||||| |||||| | |||||||| ||||| |||| ||||||| |||||||| ||||||| |||||||||||| ||||||||| |||||    
T  24423666 catgtgccaattaggggcgattcatatgcatgtgtcaaatagggcaattaaaa-tcattttgtcaaatggagcgattaatattgttatgccaaatgggg 24423763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 24499484 - 24499435
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  24499484 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 24499435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 21231525 - 21231484
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgat 342  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  21231525 tgccaaatggggcgattattatta-tatgccaattggggcgat 21231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 22404409 - 22404527
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagt 399  Q
    ||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||| ||||||||||    
T  22404409 tgccaaaagggacgattaaaactattatgccaattggggcgatatccggatcatgctctatttgcatttcatgcatttgcatcaacattgagtcttgagt 22404508  T
Q  400 cttgtg-ttgttcttgtag 417  Q
    |||||| ||||||||||||    
T  22404509 cttgtgtttgttcttgtag 22404527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 16329515 - 16329622
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagt 399  Q
    |||||||||||| |||||| | |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  16329515 tgccaaatggggtgattaaaactattatgctagttggggcgatatccggatcatggtctatttgcatttcatgcatctgcatcaacattgagtcttgagt 16329614  T
Q  400 cttgtgtt 407  Q
     |||||||    
T  16329615 attgtgtt 16329622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 29046027 - 29045921
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagt 399  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||| | ||||||||    
T  29046027 tgccaaatggggcgattaaaactattatgccaattggggcgatatccggatcatgatctatttgca-ttcatgcatctgcatcaacattgaatcttgagt 29045929  T
Q  400 cttgtgtt 407  Q
    ||||||||    
T  29045928 cttgtgtt 29045921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 16130654 - 16130520
Alignment:
Q  271 gtgccaaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttca 370  Q
    |||||||||||||||||||  | |||| | || ||||||||||||||| | |||||||||| |||| |||||||| ||||||||||||| ||||||||||    
T  16130654 gtgccaaatggggcgattatta-tcatat-gcgaaatggggcgattaaaactattatgccagttggagcgatatctggatcatggtctatttgcatttca 16130557  T
Q  371 tgcatctgcattaacattaagtcttgagtcttgtgtt 407  Q
    ||||||||||| |||||| |||||| ||| |||||||    
T  16130556 tgcatctgcatcaacattgagtcttaagtattgtgtt 16130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 27976686 - 27976609
Alignment:
Q  304 aaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||| ||||||| | |||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||    
T  27976686 aaatgggtcgattaaaactattatgccaattggggcgatatctggatcatgatctatttgcatttcatgcatttgcat 27976609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 28063214 - 28063137
Alignment:
Q  304 aaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||| ||||||| | |||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||    
T  28063214 aaatgggtcgattaaaactattatgccaattggggcgatatctggatcatgatctatttgcatttcatgcatttgcat 28063137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 19714012 - 19713967
Alignment:
Q  331 aattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||    
T  19714012 aattggggcgatatccggatcatggtcaagttgcatctcatgcatc 19713967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 19704419 - 19704373
Alignment:
Q  330 caattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||||    
T  19704419 caattggggtgatatccggatcatggtcaagttgcatctcatgcatc 19704373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 300 - 417
Target Start/End: Complemental strand, 18286274 - 18286156
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagt 399  Q
    ||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||| |||| |||||||| |||||| ||||| |||||| ||||| ||||    
T  18286274 tgccaaaaggggcgattaaaactattatgtcaattggggcgatatccggatcatgctctatttgcattttatgcatttgcatcaacattgagtctcgagt 18286175  T
Q  400 cttgtg-ttgttcttgtag 417  Q
    |||||| ||||||||||||    
T  18286174 cttgtgtttgttcttgtag 18286156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 41942629 - 41942548
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||||    
T  41942629 tgccaaatggggcgattaaaactattatgccaattgaggcgatatccggatcatggtctgtttgcatttcatgcatttgcat 41942548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 41951651 - 41951570
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||||||||||||||| | |||||||||||||| | ||||||||| ||||||||||  ||||||||||||||| |||||    
T  41951651 tgccaaatggggcgattaaaactattatgccaattgagacgatatccgaatcatggtctgtttgcatttcatgcatttgcat 41951570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 31518600 - 31518544
Alignment:
Q  323 attatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgc 379  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  31518600 attatgccaactagggcgatatccggatcatggtctacttgcatttcatgcatctgc 31518544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 10335608 - 10335527
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    |||||||||||| |||||| | |||||||  | ||||||||||||| | ||||||||||  || |||||||| ||| |||||    
T  10335608 tgccaaatggggtgattaaaactattatgaaagttggggcgatatctgaatcatggtctgtttacatttcatacatttgcat 10335527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 108482 - 108588
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcattaacattaagtcttgagt 399  Q
    ||||||||||||||||||| | ||||||||||||||||  |||||||||||||||||||  ||||||||||||||| ||||| |||||| ||||||| ||    
T  108482 tgccaaatggggcgattaaaactattatgccaattgggatgatatccggatcatggtctgtttgcatttcatgcatttgcatcaacattgagtcttg-gt 108580  T
Q  400 cttgtgtt 407  Q
    ||||||||    
T  108581 cttgtgtt 108588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 13379618 - 13379540
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13379618 caaatgggacgattaaaactattatgccaattggggcgatatccggatcatggtctatttgcatttcatgcatctgcat 13379540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 51443010 - 51442929
Alignment:
Q  300 tgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    |||||| |||||||||| | | |||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||    
T  51443010 tgccaattggggcgatttaaactattatgccaattgggacgatatccgaatcatgatctatttgcatttcatgcatctgcat 51442929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 2269179 - 2269107
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    |||||| |||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  2269179 caaatgaggcgatta-tattactatgccaattggggcgctatcctgatcatggtctagttgcatctcatgcatc 2269107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 24302586 - 24302522
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatt 367  Q
    ||||||||| |||||| | |||||||||||||||| ||||||||  ||||||||||| |||||||    
T  24302586 caaatggggtgattaaaactattatgccaattgggacgatatccaaatcatggtctatttgcatt 24302522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 11917731 - 11917681
Alignment:
Q  326 atgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  11917731 atgccaattggggcgatatctagatcatggtcaagttgcatgtcatgcatc 11917681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 20601013 - 20600967
Alignment:
Q  330 caattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||    
T  20601013 caattggggcgatatctggatcatggtcaagttgcatctcatgcatc 20600967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 42833923 - 42833976
Alignment:
Q  319 tattattatgccaattggggcgatatccggatcatggtctagttgcatttcatg 372  Q
    ||||||| || ||||||||| |||||| | ||||||||||||||||||||||||    
T  42833923 tattattgtgtcaattggggtgatatctgtatcatggtctagttgcatttcatg 42833976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 2617 - 2697
Alignment:
Q  301 gccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatctgcat 381  Q
    ||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  2617 gccaaatggggtgattaaaactattatgtcaattggggcgatatccggatcatggtctatttgcatttcatgcatttgcat 2697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 21857752 - 21857848
Alignment:
Q  217 gtgtcaaatagggcgattcttattcatgtgccaattagggcgattcgtttgcatgtgccaaatggggcgattaaaaatcattttgccaaatggggcgat 315  Q
    ||||||||||||| ||||| |||||||||| ||| ||||||  ||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  21857752 gtgtcaaatagggtgattcatattcatgtgtcaaatagggc--ttcatatgcatgtgccaaatggggcgatcaaaaataattttgccaaatggggcgat 21857848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 22625553 - 22625602
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  22625553 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 22625602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 29955080 - 29955031
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  29955080 tgccaattggggcgatatccggatcatggtcaagttgcatctcatgcatc 29955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 21857833 - 21857937
Alignment:
Q  272 tgccaaatggggcgattaaaaatcattttgccaaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcat 371  Q
    |||||||||||||||| |||||| ||||||||  |||| ||||||||  ||||| || |||  ||  | |||||||||||||||||||||||||| | ||    
T  21857833 tgccaaatggggcgatcaaaaattattttgccggatggagcgattaaagttattgtgtcaaacggaacaatatccggatcatggtctagttgcatattat 21857932  T
Q  372 gcatc 376  Q
    |||||    
T  21857933 gcatc 21857937  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 12492291 - 12492336
Alignment:
Q  331 aattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  12492291 aattggggcgatatccagatcatggtctagttgcatctcatgcatc 12492336  T

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Target: scaffold0028 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 148010 - 147936
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatct 377  Q
    |||||| | ||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  148010 caaatgtgacgattaaaactattatgccaattggggcgatatccggatcatggtctacttgcatctcatgcatct 147936  T

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Target: scaffold0150 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 35378 - 35304
Alignment:
Q  303 caaatggggcgattaatattattatgccaattggggcgatatccggatcatggtctagttgcatttcatgcatct 377  Q
    |||||| | ||||||| | ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  35378 caaatgtgacgattaaaactattatgtcaattggggcgatatccggatcatggtctacttgcatctcatgcatct 35304  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 31094964 - 31095013
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  31094964 tgccaattggggcgatatccggatcatggtctaggtgcatctcatgcatc 31095013  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 18926908 - 18926797
Alignment:
Q  114 attttgtggagttgataagctatgtgatttgagaatataaaactacaaagatttgaaggaaaaatacattgcattcatagcatggcatataatagtgtca 213  Q
    |||||||||| |||||||  | |||| ||| ||| ||||||||| |||| || | ||| || | ||||||| || |||| ||||||||||||| |||||     
T  18926908 attttgtggaattgataaattgtgtggtttaagagtataaaacttcaaatatgtaaagaaatagtacattgtatgcatatcatggcatataattgtgtct 18926809  T
Q  214 taggtgtcaaat 225  Q
    ||||| ||||||    
T  18926808 taggtttcaaat 18926797  T

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Target: scaffold1028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 1373 - 1422
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  1373 tgccaattggggcgatatccgaatcatggtcaagttgcatctcatgcatc 1422  T

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Target: scaffold0631 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 4841 - 4890
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  4841 tgccaattgaggcgatatccggatcatggtcaagttgcatctcatgcatc 4890  T

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Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 76088 - 76039
Alignment:
Q  327 tgccaattggggcgatatccggatcatggtctagttgcatttcatgcatc 376  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  76088 tgccaattggggcgatatccggatcatggtcaagttgcatctcatccatc 76039  T

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Target: scaffold0224 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 21003 - 21056
Alignment:
Q  319 tattattatgccaattggggcgatatccggatcatggtctagttgcatttcatg 372  Q
    ||||||| || ||||||||| |||||| | ||||||||||||||||||||||||    
T  21003 tattattgtgtcaattggggtgatatctgtatcatggtctagttgcatttcatg 21056  T

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