View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314-Insertion-6 (Length: 328)
Name: NF1314-Insertion-6
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 35278262 - 35278582
Alignment:
| Q |
7 |
attatactcataa-tcaatatataaataaagcttaaatttgaattctttgacaccattaagcacaggtaaacttcatatctatgaaataggaaccnnnnn |
105 |
Q |
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| T |
35278262 |
attatactcataaatcaatatataaataa-gcttaaatttgaattctttgacaccattaagcataggtaaacttcatatctatgacataggaaccaaata |
35278360 |
T |
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| Q |
106 |
nnnnnnnnnnnnnnnnnnnnggataatggaactttattttgcagccaataaaa-ctttagactaagacaaagtgcaaattgcaaccagntcagctcaccc |
204 |
Q |
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| T |
35278361 |
aaaaacacttaaaataaaaaggataatggaactttattttgcagccaataaaaactttagactaagacaaaatgcaaattgcaaccag-----ctcaccc |
35278455 |
T |
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| Q |
205 |
accactcgtgcacttcctatacgcatgaaagtttgtttcactcactgcacgacatgacnccatatattgtttgtctcaaatagtgtatagaat---tcct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
35278456 |
accactcgtgcacttcctatacgcatgaaagtttgtttcactcactgcacgacatgaccccatatattgtttgtctcaaatagtgtatagaattaatcct |
35278555 |
T |
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| Q |
302 |
tttcactttttcttttgtcaccaaata |
328 |
Q |
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| T |
35278556 |
tttcactttttcttttgtcaccaaata |
35278582 |
T |
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