View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_high_10 (Length: 443)
Name: NF13140_high_10
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 426
Target Start/End: Original strand, 52432954 - 52433359
Alignment:
| Q |
21 |
tagttactatatacaccaccagaccaggcataacccctcttctttttcttatttcaaccaccaagccggcaaatcatattaatatatacacttattttcc |
120 |
Q |
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| T |
52432954 |
tagttactatatacaccaccagaccaggcataacccctcttctttttcttatttcaaccaccaagccggcaaatcatattaatatatacacttattttcc |
52433053 |
T |
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| Q |
121 |
aaaaaataccatctataaataaataaacacggagagaatcttcatttgcttcaacacaaggcagggaaaaacaaaacagaataataataatgaagcatat |
220 |
Q |
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| T |
52433054 |
taaaaataccatctataaataaataaacacggagagaatcttcatttgcttcaacacaaggcagggaaaaacaaaacagaataataataatgaagcatat |
52433153 |
T |
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| Q |
221 |
gttctttctatttttcatagttctctatgtgatctcactactcaacgtagaagcagatgatgagtttgtgaaaacaagaggagtgcagcttatgctgaac |
320 |
Q |
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| T |
52433154 |
gttctttctatttttcatagttctctatgtgatctcactactcaacgtagaagcagacgatgagtttgtgaaaacaagaggagtgcagcttatgctgaac |
52433253 |
T |
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| Q |
321 |
ggaagcccttattatgccaatggttataatgcatattggttaatgtattttgcttctgatccatctcaaaggaacaaagtctcatcaacttttcaagagg |
420 |
Q |
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| T |
52433254 |
ggaagcccttattatgccaatggttataatgcatattggttaatgtattttgcttctgatccatctcaaaggaacaaagtctcatcaacttttcaagagg |
52433353 |
T |
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| Q |
421 |
cttcat |
426 |
Q |
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|||||| |
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| T |
52433354 |
cttcat |
52433359 |
T |
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