View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_high_11 (Length: 432)
Name: NF13140_high_11
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 27800846 - 27801251
Alignment:
| Q |
18 |
tctattcggaacgaggaagagttttctcatggtgctaataatggattgaagaaagctattgatttctgtggtatattattactattctattcaatttaat |
117 |
Q |
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| T |
27800846 |
tctattcggaacgaggaagagttttctcatggtgctaataatggattgaagaaagctattgatttctgtggtatattattactattctattcaatttaat |
27800945 |
T |
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| Q |
118 |
caatttcactttcagtttttgttgttgtaaaactagtatgaatatcattggtttctttatgtcacagaggaagtgaaggcaaaccatcctaagatttcat |
217 |
Q |
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| T |
27800946 |
caatttcactttcagtttttgttgttgtaaaactagtatcaatatcattggtttctt-atgtcacagaggaagtgaaggcaaaacatcctaagatttcat |
27801044 |
T |
|
| Q |
218 |
atgctgacctttatcaggtgattatttaccttcactcacttgttatgtaaatctgcaataaatccaataattttgtgttcaagtggttttcttagaaatt |
317 |
Q |
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| T |
27801045 |
atgctgacctttatcaggtgattatttaccttcactcacttgttatgtaaatctgcaataaatccaataattttgtgttcaagtggttttcttagaaatt |
27801144 |
T |
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| Q |
318 |
gtagaatggggtcaatgactttcaattttgtctccagtgtgcaacatgattttttgattagataaatttatttatgttatgtctattgcggagctcctat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27801145 |
gtagaatggggtcaatgactttcaattttgtctccagtgtgcaacatgattttttgattagataaatttatttatgttatgtctattgtggcgctcctat |
27801244 |
T |
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| Q |
418 |
ctctgct |
424 |
Q |
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|||||| |
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| T |
27801245 |
ttctgct |
27801251 |
T |
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