View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_high_15 (Length: 389)
Name: NF13140_high_15
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 49812748 - 49812377
Alignment:
| Q |
1 |
caatttctatatatacaatgcattacaatatgggcctcggtttaaaataaaaaagacaagattcgctatttcaaccgaataaacaaccaaattaagcaat |
100 |
Q |
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| T |
49812748 |
caatttctatatatacaatgcattacaatatgggcctcggtttaaaataaaaaagacaagattcgttatttcaaccgaataaacagcca----------t |
49812659 |
T |
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| Q |
101 |
tgaaatataaaagcatatccaattcaattcttcattgatcatacatattctttgttttggaggttgtttgtttgtgtttatcaccggcatgggtaagggt |
200 |
Q |
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| T |
49812658 |
tgaaatataaaagcatatccaattcaattcttcattgatcatacatattctttgttttggaggttgtttgtttgtgtttatcaccggcatgggtaagggt |
49812559 |
T |
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| Q |
201 |
gacattgaggctgggttttcccacgcacatggcgacagcctgtatccgtcgatgatagagtcacctgagctccgatggggtttcatccgtaaagtttaca |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49812558 |
gacattgaggctggattttcccacgcacatggcgacaacctgtatccgtcgatgatagagtcacctgagctccgatggggtttcatccgtaaagtttaca |
49812459 |
T |
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| Q |
301 |
tcattgtttccattcagcttctgctcacagctggtgttgcatgctttttcatgttttttccaccagcaagggattttcttcg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49812458 |
tcattgtttccattcagcttctgctcacagctggtgttgcatgctttttcatgttttttccaccagcaagggattttgttcg |
49812377 |
T |
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