View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_high_5 (Length: 558)
Name: NF13140_high_5
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 13 - 540
Target Start/End: Original strand, 21716348 - 21716875
Alignment:
| Q |
13 |
aatatattcagaaactttagcaacagttgtgataacaatatctgccatgaactcaaaggcaaccctaacaatagaatcatgtgcatagttagtcaaatat |
112 |
Q |
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| T |
21716348 |
aatatattcagaaactttagcaacagttgtgataacaatatctgccatgaactcaaaggcaaccctaacaatagaatcatgtgcatagttagtcaaatat |
21716447 |
T |
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| Q |
113 |
ttacctcgagcatagttatgtaattagttgttggatcatnnnnnnnnnnnnnnnnnntagagtttgtcatacttgcaatggaattgaatannnnnnnggt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
21716448 |
ttacctcgagcatagttatgtaattagttgttggatcataaaaaaaataaaaataaatagagtttgtcatacttgcaatggaattgaatatttttttggt |
21716547 |
T |
|
| Q |
213 |
gttaaccctcttattctcaggcgaaaggtcccttgataatccgaagtaagtaaagtctggcaaagaattgttccagcttaggaaaatacaatttaatata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716548 |
gttaaccctcttattctcaggcgaaaggtcccttgataatccgaagtaagtaaagtctggcaaagaattgttccagcttaggaaaatacaatttaatata |
21716647 |
T |
|
| Q |
313 |
aataaacttttatattaaaggaaacatgctatacaaaactcaaactttaatcacgcctagaatcctaatgttacagaataatgaacttatttatgtatgc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716648 |
aataaacttttatattaaaggaaacatgctatacaaaactcaaactttaatcaagcctagaatcctaatgttacagaataatgaacttatttatgtatgc |
21716747 |
T |
|
| Q |
413 |
aaaagaaagaacatttaatagctaaaacatccaattcagagcaagaaaccagttttaccattgatatattcagagcgtgcatgaaagcaccatacctgat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716748 |
aaaagaaagaacatttaatagctaaaacatccaattcagagcaagaaaccagttttaccattgatatattcagagcgtgcatgaaagcaccatacctgat |
21716847 |
T |
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| Q |
513 |
ctaggagtggatttctgtggcaggagat |
540 |
Q |
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| T |
21716848 |
ctaggagtggatttctgtggcaggagat |
21716875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 21703147 - 21703051
Alignment:
| Q |
18 |
attcagaaactttagcaacagttgtgataacaatatctgccatgaactcaaaggcaaccctaacaatagaatcatgtgcatagttagtcaaatattta |
115 |
Q |
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|||||| || |||||||||| | | |||||| | |||||||| || | ||||| || |||||||||| ||||||||||||||||||||||||||||| |
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| T |
21703147 |
attcagcaagtttagcaacaatggagataacgttttctgccatcaaattaaagg-aagcctaacaatacaatcatgtgcatagttagtcaaatattta |
21703051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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