View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_high_7 (Length: 497)
Name: NF13140_high_7
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_high_7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 7153976 - 7154453
Alignment:
| Q |
18 |
atatttcgtatgcttttaccattaaacattgacaacacaatacagcacataattgaagatgcaatatctaacccaatcttttgaactttacnnnnnnnnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7153976 |
atatttcgtatgcttttaccattaaacattgacaaca--atacaacacataattgaagatgcaatatctaacccaatcttttgaactttactttttattt |
7154073 |
T |
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| Q |
118 |
nnnnaaatataaaaaatgtacacaatttgatatttcaggacgtatttgttgctggaactgatacaacatcgacaacaatagagtgggctatgtcagaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7154074 |
ttttaaatataaaaaatgtacacaatttgatatttcaggacgtatttgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaat |
7154173 |
T |
|
| Q |
218 |
gatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatttaaatgaactaact |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7154174 |
gatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaact |
7154273 |
T |
|
| Q |
318 |
tactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7154274 |
tactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatg |
7154373 |
T |
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| Q |
418 |
aaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatg |
497 |
Q |
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| T |
7154374 |
aaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatg |
7154453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 149 - 495
Target Start/End: Original strand, 7141335 - 7141681
Alignment:
| Q |
149 |
atttcaggacgtatttgttgctggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagca |
248 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||| |
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| T |
7141335 |
atttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgagggagaaggca |
7141434 |
T |
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| Q |
249 |
caagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaatga |
348 |
Q |
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||||||||| ||||| |||||||||| || ||| || |||||| |||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||| |
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| T |
7141435 |
caagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaacattga |
7141534 |
T |
|
| Q |
349 |
ggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaa |
448 |
Q |
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|||||||||||||||| ||||| ||||| || ||| |||| ||| | |||| |||||||| ||||| |||||||||||||||| ||| | ||||| |
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| T |
7141535 |
ggttacacccaccttctcctttgttggttccaagattgagcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaa |
7141634 |
T |
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| Q |
449 |
tgcatgggcagtggcaagagatccacaatattggactgatgctgaga |
495 |
Q |
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||| |||||| | | ||||||||| ||||||||| ||||||||||| |
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| T |
7141635 |
tgcgtgggcaataggaagagatcctaaatattggaatgatgctgaga |
7141681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 190 - 497
Target Start/End: Original strand, 7131652 - 7131959
Alignment:
| Q |
190 |
caacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataat |
289 |
Q |
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||||||||| ||||| ||||||||| |||||||||| |||||||||| | || |||||||||||| |||||||||||| ||||||||| |||| || |
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| T |
7131652 |
caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcatgcaaaggaaaagaaattat |
7131751 |
T |
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| Q |
290 |
atctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgc |
389 |
Q |
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| T |
7131752 |
atctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagagaccttaaggttacactcacctactcctttattactccctagagaatgc |
7131851 |
T |
|
| Q |
390 |
actgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatg |
489 |
Q |
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|||||||| |||| ||| ||||||||||| ||||||||||| |||||||| ||||| |||| |||||| ||||||| ||||| |||||||||||||||| |
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| T |
7131852 |
actgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatg |
7131951 |
T |
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| Q |
490 |
ctgagatg |
497 |
Q |
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|||||||| |
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| T |
7131952 |
ctgagatg |
7131959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 55955274 - 55955105
Alignment:
| Q |
194 |
aatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatct |
293 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||| |||| | ||||||||| | ||| |||||||||| | ||||| || || | ||||| | |
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| T |
55955274 |
aatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatat |
55955175 |
T |
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| Q |
294 |
gaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacctt |
363 |
Q |
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|| |||| || ||||||| | |||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
55955174 |
gagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt |
55955105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 55955067 - 55954999
Alignment:
| Q |
404 |
catagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatcc |
472 |
Q |
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||||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| | | ||||||||| |
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| T |
55955067 |
catagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcc |
55954999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 362
Target Start/End: Original strand, 12268081 - 12268252
Alignment:
| Q |
191 |
aacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataata |
290 |
Q |
| |
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||||||||| |||||||||||||| | |||||||| || || ||||| ||||||||||||||| ||||||||| | ||||| ||||| | ||| |
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| T |
12268081 |
aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatt |
12268180 |
T |
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| Q |
291 |
tctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacct |
362 |
Q |
| |
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| |||| |||||| ||||||| | |||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
12268181 |
tatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaaccctgaggttacacccacct |
12268252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 362
Target Start/End: Complemental strand, 12425604 - 12425433
Alignment:
| Q |
191 |
aacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataata |
290 |
Q |
| |
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|||||||||||||||||||||||| | |||||||| ||||| |||| | || |||||||||||| |||||||||| | ||||| ||||| | |||| |
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| T |
12425604 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata |
12425505 |
T |
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| Q |
291 |
tctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacct |
362 |
Q |
| |
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| ||| |||| || || |||| ||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
12425504 |
tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaaccctgaggttacacccacct |
12425433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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