View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_high_8 (Length: 495)
Name: NF13140_high_8
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 5282506 - 5282037
Alignment:
| Q |
7 |
gtgataagaagaaaaagattgagagaaaataaaatgttgaataagtatatgaaaattagagatgttcatatacaatcactcattataaaaatgggtaata |
106 |
Q |
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| T |
5282506 |
gtgataagaagaaaaagattaagagaaaataaaatgttgaataagtatatgaaaatcagagatgttgatatacaatcactcattataaaaatgtgtaata |
5282407 |
T |
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| Q |
107 |
gtttgaaattgatatacaatatatttatgtttatttagagacaaacttggaataatgtaattaattaatatttcatttatttaaatgtaaaacatcactt |
206 |
Q |
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| T |
5282406 |
gtttgaaattgatatacaatatatttatgtttatttagagacaaacttggaataatgtaattaattaatatttcatttatttaaatgtaaaacatcactt |
5282307 |
T |
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| Q |
207 |
gagacnnnnnnnnnngtctaaatacgtagaagcaatgatacacatgacgtggcatgggttgtgtggatgtctgaatgagacatgcattgagaattagtga |
306 |
Q |
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| T |
5282306 |
gagacaaaaaaaa--gtctaaatatgtagaagcaatgatacacatgacgtggcatgggctgtgtgaatgtctgaatgagacatgcattgagaattagtga |
5282209 |
T |
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| Q |
307 |
ccatatagtatatgaatatattgttaaattaattagatcagtttggtaagacagtttaataaggacgaaaagagctgtcatcatatattgtacttcaatg |
406 |
Q |
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| T |
5282208 |
ccatatagtat--gaatatattgttaaattaattagttcagtttggtaagacagtttaataaggacgaaaagagctgtcatcatatattgtacttcaatg |
5282111 |
T |
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| Q |
407 |
ctttaaaattgcacacaattttttgaagaacttgagggcacggtatatattaatagatggagtttctgtaaagag |
481 |
Q |
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| T |
5282110 |
cttt-aaattgcacacaattttttgaagaacttgagggcacggtatatattaatagatggagtttctgtaaagag |
5282037 |
T |
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