View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_12 (Length: 424)
Name: NF13140_low_12
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 25 - 409
Target Start/End: Complemental strand, 31947988 - 31947604
Alignment:
| Q |
25 |
tttaatacaaataaaaatgacgcggtggaccgccggtgttttattcaacccgcctcgtccttaactaagattttgtgtttagggattgtggaccaccaat |
124 |
Q |
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| T |
31947988 |
tttaatacaaattaaaatgactttgtggaccgcccgtgtcttattcaaaccacttcgtccttaaccaagattttgtgtttagggattgtggaccaccaat |
31947889 |
T |
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| Q |
125 |
gttcggataagggcccattagccctagaaaagggcagcatgcacgccagcgagggcagtctcccttccttatcccccgaaatcatcaagcccgagctttt |
224 |
Q |
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| T |
31947888 |
gttcggataagggcccattagccctagaaaagggcagcgtgcatgccagcgagggcgctctcccttccttatcccccgaaatcatcaagcccgagctttt |
31947789 |
T |
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| Q |
225 |
aggtgaaacattcgactaataaaaggatatacgtgttttcccctattataggtaacttagggagtaagtcgcgaaaaagaatgcccaaaaggctaaaaaa |
324 |
Q |
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| T |
31947788 |
aggtgaaacattcgactaataaaaggatatacgtgctttcccctattataggtaacttagggagtaagtcgcgaaaaagaatgcccaaaaggctaaaaac |
31947689 |
T |
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| Q |
325 |
taaataacatcatggatatcattcccaaagcataaccaaatcagatatcaaaccttagttttaatattgttctcactgcaagtac |
409 |
Q |
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| T |
31947688 |
taaatagcatcatggatatcattcccaaagcatgaccaaatcagatatcaaaccttagttttaacattgttctcactgcaagtac |
31947604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 28222128 - 28222097
Alignment:
| Q |
265 |
ccctattataggtaacttagggagtaagtcgc |
296 |
Q |
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| T |
28222128 |
ccctattataggtaacttagggagtaagtcgc |
28222097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 28222056 - 28221988
Alignment:
| Q |
342 |
atcattcccaaagcataacc-aaatcagatatcaaaccttagttttaatattgttctcactgcaagtac |
409 |
Q |
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|||||||||| |||||||| ||||||||||| ||| | ||||||||||||| | |||| ||||||||| |
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| T |
28222056 |
atcattcccagagcataacttaaatcagatattaaatcctagttttaatattatactcattgcaagtac |
28221988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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