View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_15 (Length: 401)
Name: NF13140_low_15
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 49812935 - 49813309
Alignment:
| Q |
1 |
tcatcatgttacgtacgcatcacctatttgcactagaccgaagtggtatatactctcaacatgcattgataattgattaatatttccaattaccatatag |
100 |
Q |
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| T |
49812935 |
tcatcatgttacgtacgcatcacctatttgcactagaccgaagtggtatatactctcaacatgcattgataattgattaatatttccaattaccatatag |
49813034 |
T |
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| Q |
101 |
ctattagttgattaactgattgcatacatgtcaatcatcacaaatatatatagaaggggaataaaaattatgcaaccatcctctatatctttccctactt |
200 |
Q |
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| T |
49813035 |
ctattagttgattaactgattgcatacatgtcaatcataacaaatatatatagaaggggaataaaaattatgcaaccatcctctatatctttccctactt |
49813134 |
T |
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| Q |
201 |
gcagtccatttcaaaaattatgtaattcatttatttattcacaccatagagtttgtacaaggcgggacgccgggacctatctatattccatgcctctgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49813135 |
gcagtccatttcaaaaattatgtaattcatttatttattcacaccatagagtttgtacaaggcgggacgccgggacctatctatattccatgcctctgcc |
49813234 |
T |
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| Q |
301 |
tcagatggtgtcatgtgcgcctgaccaataccaatttgtcatggcaccaccaaattcattataaaactaaattgc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49813235 |
tcagatggtgtcatgtgcgcctgaccaataccaatttgtcatggcaccgccaaattcattataaaactaaattgc |
49813309 |
T |
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