View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13140_low_16 (Length: 391)

Name: NF13140_low_16
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13140_low_16
NF13140_low_16
[»] chr2 (7 HSPs)
chr2 (1-140)||(132743-132882)
chr2 (253-379)||(133036-133162)
chr2 (22-141)||(45336357-45336476)
chr2 (22-141)||(45338669-45338788)
chr2 (3-141)||(1454005-1454144)
chr2 (22-141)||(17648969-17649088)
chr2 (41-141)||(14662448-14662548)
[»] chr8 (2 HSPs)
chr8 (22-141)||(44734250-44734369)
chr8 (25-141)||(44731942-44732058)
[»] chr4 (2 HSPs)
chr4 (22-141)||(22804709-22804828)
chr4 (22-121)||(7230912-7231010)
[»] chr3 (5 HSPs)
chr3 (22-141)||(48023927-48024047)
chr3 (22-141)||(28784611-28784730)
chr3 (22-121)||(5354559-5354658)
chr3 (22-121)||(48707642-48707741)
chr3 (36-110)||(5913484-5913558)
[»] chr5 (2 HSPs)
chr5 (22-141)||(32798104-32798223)
chr5 (22-141)||(32800416-32800535)
[»] chr1 (3 HSPs)
chr1 (22-141)||(1550254-1550373)
chr1 (22-141)||(9535353-9535472)
chr1 (258-317)||(35046733-35046792)
[»] chr7 (2 HSPs)
chr7 (22-141)||(13108750-13108870)
chr7 (22-134)||(13111050-13111163)
[»] chr6 (1 HSPs)
chr6 (22-134)||(6723561-6723675)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 132743 - 132882
Alignment:
Q  1 attaagtaaagtagtcactaagtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  132743 attaagtaaagtagtcactaagtaatgatggctagtgtttagagtagatttattgcagatttgattttcagtcttacaggcagacttatggcttgcctct 132842  T
Q  101 atatatttgtagtgtatgcttcagtataatgtattaaagt 140  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  132843 atatatttgtagtgtatgcttcagtttgatgtattaaagt 132882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 253 - 379
Target Start/End: Original strand, 133036 - 133162
Alignment:
Q  253 tggttaggtatttatctattgttaaagaagaagggctagagatatcacagcctgcactggatcctggtaaatcagaaatacatcatccactgacagttca 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  133036 tggttaggtatttatctattgttaaagaagaagggctagagatatcacagcctgcactggatcctggtaaatcagaaatacatcatccattgacagttca 133135  T
Q  353 taaagcaggatcaaaagtacacaggtt 379  Q
    |||||||||||||||||||||||||||    
T  133136 taaagcaggatcaaaagtacacaggtt 133162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 45336357 - 45336476
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  45336357 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 45336456  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  45336457 aagtttaatgtatcaaagta 45336476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 45338669 - 45338788
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  45338669 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 45338768  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  45338769 aagtttaatgtatcaaagta 45338788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 1454005 - 1454144
Alignment:
Q  3 taagtaaagtagtcactaagtaatgatggctagtgtttagagtagatttattgcaga-ttttattttcagtcttacaggcagacttatggcttgcctcta 101  Q
    ||||||||| |||| |||  |||||||| |||||||||| | |||||||| |||||| ||||||||||| | ||||| | |  ||||||||||| |||||    
T  1454005 taagtaaagaagtccctagataatgatgactagtgtttaaaatagatttactgcagagttttattttcaattttacaagaaagcttatggcttggctcta 1454104  T
Q  102 tatatttgtagtgtatgcttcagtataatgtattaaagta 141  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  1454105 tatatttgtagtgtatgcttcagtttaatgtatcaaagta 1454144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 17648969 - 17649088
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||| |||| ||||||| |||  ||||||||||| ||||||||||||||  |||||||||    
T  17648969 gtaatgatgactagtgtttagagtagatttagtgcatattttatgttcaatcttacaagcaagcttatggcttggctctatatatttgttatgtatgctt 17649068  T
Q  122 cagtataatgtattaaagta 141  Q
    |||   ||||||| ||||||    
T  17649069 cagctaaatgtatcaaagta 17649088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 14662448 - 14662548
Alignment:
Q  41 agagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgcttcagtataatgtattaaagt 140  Q
    |||||||||||  ||||||| |||| |||||| ||||| |||   |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  14662448 agagtagatttcgtgcagatcttatgttcagttttacaagcaagtttatggcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagt 14662547  T
Q  141 a 141  Q
    |    
T  14662548 a 14662548  T

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Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 44734250 - 44734369
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| |||||||||||||||||||||||||    
T  44734250 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgctt 44734349  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  44734350 aagtttaatgtatcaaagta 44734369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 44731942 - 44732058
Alignment:
Q  25 atgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgcttcag 124  Q
    |||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||||||||||||| ||    
T  44731942 atgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaag 44732041  T
Q  125 tataatgtattaaagta 141  Q
    | |||||||| ||||||    
T  44732042 tttaatgtatcaaagta 44732058  T

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Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 22804709 - 22804828
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||  ||||||||||||||| |||||||||||||||||||||| ||    
T  22804709 gtaatgatgactagtgtttagagtagatttaatgcagattttatgtttagtcttacaaacagacttatggcttggctctatatatttgtagtgtatgttt 22804808  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  22804809 aagtttaatgtatcaaagta 22804828  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 7231010 - 7230912
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||| |||| |||| || | |   |||||||||| |||||||| |||||  |||||||||    
T  7231010 gtaatgatgactagtgtttagagcagatttagtgcagattttatgttcaatcttccaagaaagtttatggcttggctctatat-tttgttatgtatgctt 7230912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 48024047 - 48023927
Alignment:
Q  22 gtaatgatggctagtgttta-gagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgct 120  Q
    ||||||||| |||||| ||| ||||||||||| |||||||||||| |||||||||||| |||  ||||||||||| ||||||||||||||||||||||||    
T  48024047 gtaatgatgactagtgcttaagagtagatttagtgcagattttatgttcagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgct 48023948  T
Q  121 tcagtataatgtattaaagta 141  Q
    ||||| |||||||| ||||||    
T  48023947 tcagtttaatgtataaaagta 48023927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 28784611 - 28784730
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  |||||||||||  ||||||||||||||||||||||||    
T  28784611 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgattctatatatttgtagtgtatgctt 28784710  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  28784711 aagtttaatgtatcaaagta 28784730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 5354658 - 5354559
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||| || ||||||||| | |  ||||||||||| |||||||||||||||||||||||||    
T  5354658 gtaataatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagtaagcttatggcttggctctatatatttgtagtgtatgctt 5354559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 48707741 - 48707642
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| |||||||||| |||||||||| || ||||||||| || ||||||||| |||  ||||||||||| |||||||||||||||||||||||||    
T  48707741 gtaatgatgactagtgtttaaagtagatttagtgtagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgctt 48707642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 5913484 - 5913558
Alignment:
Q  36 tgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgt 110  Q
    ||||||||||||||||| |||||||||||| |||| ||||||| |||  ||||||| ||| ||||||||||||||    
T  5913484 tgtttagagtagatttaatgcagattttatgttcaatcttacaagcaagcttatggtttgactctatatatttgt 5913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 32798104 - 32798223
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  32798104 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 32798203  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  32798204 aagtttaatgtatcaaagta 32798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 32800416 - 32800535
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  32800416 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 32800515  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  32800516 aagtttaatgtatcaaagta 32800535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 1550254 - 1550373
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  1550254 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtaatgtatgctt 1550353  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  1550354 aagtttaatgtatcaaagta 1550373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 9535353 - 9535472
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 121  Q
    ||||||||| ||||||||||||||||||||| || ||||||||| || ||||||||| |||   |||||||||| |||||||||||||||||||||| ||    
T  9535353 gtaatgatgactagtgtttagagtagatttagtgtagattttatgtttagtcttacaagcaagtttatggcttgactctatatatttgtagtgtatgttt 9535452  T
Q  122 cagtataatgtattaaagta 141  Q
     ||| |||||||| ||||||    
T  9535453 aagtttaatgtatcaaagta 9535472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 35046792 - 35046733
Alignment:
Q  258 aggtatttatctattgttaaagaagaagggctagagatatcacagcctgcactggatcct 317  Q
    |||||| | |||||||| |||||||||||||| ||||||||||| || ||||| ||||||    
T  35046792 aggtatgtttctattgtcaaagaagaagggcttgagatatcacaaccagcacttgatcct 35046733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 13108870 - 13108750
Alignment:
Q  22 gtaatgatggctagtgttta-gagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgct 120  Q
    ||||||||| |||||| ||| |||||||||||   || ||||||| |||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  13108870 gtaatgatgactagtgcttaagagtagatttagaacatattttatattcagtcttacaagcaaacttatggcttgactccatatatttgtagtgtatgct 13108771  T
Q  121 tcagtataatgtattaaagta 141  Q
    ||||| |||||||| ||||||    
T  13108770 tcagtttaatgtatcaaagta 13108750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 13111163 - 13111050
Alignment:
Q  22 gtaatgatggctagtgttta-gagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgct 120  Q
    ||||||||| |||||| ||| ||||||||||| |||| |||||||  ||| ||||||| |||  ||||||||||| ||| ||||||||||| | ||||||    
T  13111163 gtaatgatgactagtgcttaagagtagatttagtgcaaattttatgctcactcttacaagcaagcttatggcttggctcaatatatttgtattttatgct 13111064  T
Q  121 tcagtataatgtat 134  Q
    ||||| ||||||||    
T  13111063 tcagtttaatgtat 13111050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 6723561 - 6723675
Alignment:
Q  22 gtaatgatggctagtgtttagagtagatttattgcagattttattt--tcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgc 119  Q
    ||||||||| || |||||||||||||||||| | || ||||||| |  | |||||||||  || ||||||| |||| |||||||||||| |||||||||     
T  6723561 gtaatgatgactcgtgtttagagtagatttaatacaaattttatatgttgagtcttacaaacaaacttatgacttggctctatatatttatagtgtatga 6723660  T
Q  120 ttcagtataatgtat 134  Q
    || ||| ||||||||    
T  6723661 tttagtttaatgtat 6723675  T

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