View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_18 (Length: 372)
Name: NF13140_low_18
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4391072 - 4391373
Alignment:
| Q |
1 |
ttttttagagtattgattattgatgagtgatagaaatataatgatacatagaaggtttcatattaagaaagttttattgaatttgataaatttattataa |
100 |
Q |
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| T |
4391072 |
ttttttagagtaatgattattgatgagtgatagaaatataatgatacatagaaggtttcatattaagaaagttttattgaatttgataaatttattataa |
4391171 |
T |
|
| Q |
101 |
aaatagattttt------attgtgctggttaaactcatgaattttttactgc-nnnnnnnnnnncaagaagaaaaactcatgttttttagagacatcgga |
193 |
Q |
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| T |
4391172 |
aaatagatttttattgggattgtgctggttaaactcatgaattttttactgcaaaaaaaaaaaagaagaagaaaaactcatgttttttagagacatcgga |
4391271 |
T |
|
| Q |
194 |
agatgctaacaaatatagtactacttttaaaaagttnnnnnnntcttgaaaacgatgcatttcacacttttaaacattaaaaattgtattttcttctata |
293 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4391272 |
agatgctaacaaata---tactacttttaaaaagttaaaaaaatcttgaaaacgatgcatttaacacttttaaacattaaaaattgttttttcttctata |
4391368 |
T |
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| Q |
294 |
tatac |
298 |
Q |
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||||| |
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| T |
4391369 |
tatac |
4391373 |
T |
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