View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_2 (Length: 834)
Name: NF13140_low_2
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Original strand, 47854314 - 47854847
Alignment:
| Q |
9 |
agcaaagggattgtaacatcaatagaagctcttgcaataagcgcatatgagcttaacctttcatccatggctgcatagaaaacagcatttattttcaaaa |
108 |
Q |
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| T |
47854314 |
agcaaagggattgtaacatcaatagaagctcttgcaataagcgcatatgagcttaacctttcatccatggctgcatagaaaacagcatttattttcaaaa |
47854413 |
T |
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| Q |
109 |
aagaacaaatgaaagaaataaatgaaattgtactgtaggaaactatggtaaatcacataaataatttaagcacatcattacttcaaatttacttttcata |
208 |
Q |
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| T |
47854414 |
aagaacaaatgaaagaaataaatgaaattgtactgtaggaaactatggtaaatcacataaataatttaagcacatcattacttcaaatttacttttcata |
47854513 |
T |
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| Q |
209 |
ggtattaacaaaaaacacaat--tattttcaaggcaaaatctttaaatttaagctcaaaattgagttctcaaacacgccttggcacaatacaagattgga |
306 |
Q |
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| T |
47854514 |
ggtattaacaaaaaacacaatcatattttcaaggaaaaatctttaaatttaagctcgaaattgagttctcaaacacgccttggcaaaatacaagattgga |
47854613 |
T |
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| Q |
307 |
ctcggtctgctgtctgtgactgctttgtgatgttgtctgtattattactttagtacagcaacttaacaaagtccagtaacaggaaagccaatattgacnn |
406 |
Q |
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| T |
47854614 |
ctcagtctgctgtctgtaactgctttgtgatgttgtctgtattattactttagtacagcaacttaacaaagtccagtaacaggaaagccaatattgac-- |
47854711 |
T |
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| Q |
407 |
nnnnnnnnnntgacaactgaattctgggtctggcgcatgcgattttataaatctttgtcaaatttccgtaccagatattgaagcacgaagataatctgaa |
506 |
Q |
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| T |
47854712 |
aaaaacaaaatgacaactgaattctgggtctggcgcatgcgattttataaatctttgtcaaatttccgtaccagatattgaagcacgaagataatctgaa |
47854811 |
T |
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| Q |
507 |
tcaccctcatcattaaatgctgatgcagaggccact |
542 |
Q |
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| T |
47854812 |
tcaccctcatcattaaatgctgatgcagaggccact |
47854847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 615 - 819
Target Start/End: Original strand, 47854919 - 47855123
Alignment:
| Q |
615 |
cactataggaagtttcatataggctttacttcttagctcgcattctacaatgaaaccaaagagattcgcagcagcttttatcccttccgatggaagcaaa |
714 |
Q |
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| T |
47854919 |
cactataggaagtttcatataggctttacttcttagctcgcattctacaatgaaaccaaagagattcgcagcagcttttatcccttccgatggaagcaaa |
47855018 |
T |
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| Q |
715 |
tcattcacagttatggtatttattggctgaagaacaatttaaatcgttcagcgtaatgaccaagtcggagagaaaattatttcatataattatatttgaa |
814 |
Q |
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| T |
47855019 |
tcattcacagttatggtatttattggctgaagaacaatttaaatcgttcagcgtaatgaccaagtcggagagaaaattatttcatataattatatttgaa |
47855118 |
T |
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| Q |
815 |
ttaat |
819 |
Q |
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||||| |
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| T |
47855119 |
ttaat |
47855123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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