View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_21 (Length: 323)
Name: NF13140_low_21
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_21 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 52 - 309
Target Start/End: Original strand, 38752865 - 38753122
Alignment:
| Q |
52 |
tcttcctcaaattccaagctttctcttcattaattggtgagttctttaattaaattatgattttgtttgggcttttgtcttgggtatggtccatgagtag |
151 |
Q |
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| T |
38752865 |
tcttcctcaaattccaagctttctcttcattaattggtgagttctttaattaaattatgattttgtttgggcttttgtcttgggtatggtccatgagtag |
38752964 |
T |
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| Q |
152 |
aaataagggttccaattcttcaaggaacagtaaatttaagtccctttgtgcaaattgggtaattttcttctttctccaatttcaatctatgtctgtaata |
251 |
Q |
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| T |
38752965 |
aaataagggttccaattcttcaaggaacagtaaatttaagtccctttgtgcaaattgggtaattttcttctttcttcaatttcaatctatgtctgtaata |
38753064 |
T |
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| Q |
252 |
tttttctcatcattctgttgctctatgatttcgtgttgatagatgaagtgtttaatgt |
309 |
Q |
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| T |
38753065 |
tttttctcatcattctgttgctctatgatttcgtgttgatagatgaagtgtttaatgt |
38753122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 38751925 - 38752043
Alignment:
| Q |
167 |
ttcttcaaggaacagtaaatttaagtccctttgtgcaaattgggtaattttcttctttctccaatttcaatctatgtctgtaatatttttctcatcattc |
266 |
Q |
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| T |
38751925 |
ttcttcaaggaacagtaagtctgggtccctttgtgcaaattgggtaattttcttctttcttcaatttcactgtat---tctaatatttttctcatcattc |
38752021 |
T |
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| Q |
267 |
tgttgctctatgatttcgtgtt |
288 |
Q |
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| T |
38752022 |
tgttgctctatgatttcgtgtt |
38752043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 38752793 - 38752869
Alignment:
| Q |
2 |
agagatagaaaagggggttccaattcttgtattgttttgcaatcacttgttcttcctcaaattccaagctttctcttc |
79 |
Q |
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| T |
38752793 |
agagatagaaaagggggttccaattcttgtattgttt-gcaatcacttgttcttcatcaaattccaagctttctcttc |
38752869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 47652392 - 47652249
Alignment:
| Q |
18 |
gttccaattcttgtattgttttgcaatcacttgttcttcctcaaattccaagctttctcttcattaattggtgagttctttaattaaattatgattttgt |
117 |
Q |
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| T |
47652392 |
gttccaattattgttttgtttt-caatcacttgttcttcctcaaattccaagccatctctccattaattggtgagttctttaattaagttatgattttta |
47652294 |
T |
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| Q |
118 |
ttgggcttttgtcttgggtatggtccatgagtagaaataagggtt |
162 |
Q |
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| T |
47652293 |
tttgggttttttcttgggtatggtccatgagtagaattaagggtt |
47652249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 29994462 - 29994508
Alignment:
| Q |
60 |
aaattccaagctttctcttcattaattggtgagttctttaattaaat |
106 |
Q |
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| T |
29994462 |
aaattccaagctttctcttcattaatcggtgagttctttaattaaat |
29994508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 95166 - 95107
Alignment:
| Q |
48 |
ttgttcttcctcaaattccaagctttctcttcattaattggtgagttctttaattaaattat |
109 |
Q |
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| T |
95166 |
ttgttcttcctcaaattccaatctatctc--cattaattggtgagttctttaattaagttat |
95107 |
T |
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