View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_22 (Length: 310)
Name: NF13140_low_22
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 38378082 - 38378189
Alignment:
| Q |
191 |
taaaattctatatcatttaatttgaaacatatttttgttgatgtgagtgacaaatcttgcccaaaatattaaacaagaagaaaaaagaaaagataatgcg |
290 |
Q |
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| T |
38378082 |
taaaattctatatcatttaatttgaaacatatttttgttgatgtgagtgacaaatcttgcccaaaatattaaacaagaagaaaaaagaaaagataatacg |
38378181 |
T |
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| Q |
291 |
aacatatt |
298 |
Q |
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|||||||| |
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| T |
38378182 |
aacatatt |
38378189 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38377923 - 38377960
Alignment:
| Q |
1 |
tagttactcctcaccactctccaatagcaaatatttga |
38 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
38377923 |
tagttactcctaaccactctccaatagcaaatatttga |
38377960 |
T |
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