View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_23 (Length: 289)
Name: NF13140_low_23
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 25043474 - 25043193
Alignment:
| Q |
1 |
tgactgttatatctatccattgttatatcccagtcttacccattcccttgaatatacattcatggaacaaacctttccattcataacttttctatcctag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25043474 |
tgactgttatatctatccattgttatatcccagtcttactcattcccttgaatatacattcatggaacaaacctttccattcataacttttctatcctag |
25043375 |
T |
|
| Q |
101 |
tcactctcctcaattctttcacaatccataaaagaaaaatgaacgactctgaacaaccgatacaaagtcttcctcttccgatgctaacgctgtttcaatt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25043374 |
tcactctcctcaattctttcacaatccataagagaaaaatgaacgactctgaacaaccgatacaaagtcttcctcttccgatgctaacgctgtttcaatt |
25043275 |
T |
|
| Q |
201 |
catattttcccacccaaaaatttcaccacctcatgatgtccgcgctaacaatccttccgtttgcacttgctgatgatgtcca |
282 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
25043274 |
catattttcccacccaaaaattccaccacctcatgatgtccgcgctaacaatccttccatttgcacttgctgacgatgtcca |
25043193 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 10124888 - 10124778
Alignment:
| Q |
119 |
tcacaatccataaaagaaaaatgaacgactctgaacaaccgatacaaagtcttcctcttccgatgctaacgctgtttcaattcatattttcccacccaaa |
218 |
Q |
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|||||| |||| | |||| |||||| |||||||||||||| | |||||||||||||||||||||| |||| | ||||||| || ||| |||||||||| |
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| T |
10124888 |
tcacaacccattagagaacaatgaatgactctgaacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatgtttgcccacccaaa |
10124789 |
T |
|
| Q |
219 |
aatttcaccac |
229 |
Q |
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||| |||||| |
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| T |
10124788 |
tattccaccac |
10124778 |
T |
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