View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_3 (Length: 803)
Name: NF13140_low_3
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 277 - 798
Target Start/End: Complemental strand, 24599274 - 24598753
Alignment:
| Q |
277 |
aaattttaaagaagcatttgagaaactataagcacatataaatgtaatgaattacatgtaaagattaaaaattgaggaaatacaaaaggaaagcatcaca |
376 |
Q |
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||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24599274 |
aaattttaaagtagcatttgagaaactataagaaaata--aatgtaatgaattacatgtacagattaaaaattgaggaaatacaaaaggaaagcatcaca |
24599177 |
T |
|
| Q |
377 |
tttattacataaattttcaaataatcataattcttacaatccgtgtcagtgtcgcataaggttttttgtcggtgtcagtgattaataggttgctactagt |
476 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24599176 |
tttattacataaattttcaaataatcataattctttcaatccgtgtcagtgtcgtataaggttttttgtcggtgtcagggattaataggttgctactaga |
24599077 |
T |
|
| Q |
477 |
gacttgaatcttgtagttatagcatcaatattaggttaagatttaatttcacctaaaaagattttaaatacaaactcaaaatatgaatcgtccaatctta |
576 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24599076 |
gacttgaatctcgtagttatagcatcaatattaggttaagatttaatttcacctaaaaagattttaaatacaaactcaaaatatgaatcgtctaatcttg |
24598977 |
T |
|
| Q |
577 |
actcaaaatatgtttgtatctacgtcgttaatgagaaagtttacatgataaaacaacaaaat--nnnnnnnnctatgttacaaacattgaatcagttcaa |
674 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24598976 |
actcaaaatatgtttgtatctacgtcattaatgagaaagtttacatgataaaacaacaaaataaaaaaaaaactatgttacaaacattgaatcagttcaa |
24598877 |
T |
|
| Q |
675 |
aatcacaaattcaaccaacaaaatttagatcatgttaccgttttaacatcctcaaaagtgtcctcatattgaccaccaagctcactaacaatggtaactc |
774 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24598876 |
aatcacaaattcaaccaacaaaatttagatcattttaccgttttaacatcctcaaaagtgtcctcatattgaccaccaagctcactaacaatggtaactc |
24598777 |
T |
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| Q |
775 |
ttctatcttcactcctttgcttct |
798 |
Q |
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| T |
24598776 |
tcctatcttcactcctttgcttct |
24598753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 24599566 - 24599287
Alignment:
| Q |
20 |
agattcctttcaacactttaaatagcaacaaaatggtgatagtggaagatatgttaaaaaatccatatgctaatttaatataaaagtttcataactcttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24599566 |
agattcctttcaacactttaaatagcaacaaaatggtgatagtggaagatatgttaaaaaatccatatgctaatttaatataaaagtttcataactcttg |
24599467 |
T |
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| Q |
120 |
attgaacatgcaagctgcttagaatatgcatcttgatgagttgttaatttgagatggctctgtaactatgaactatagaattatgacttcaaagaaatga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24599466 |
attgaacatgcaagctgcttagaatatgcatcttgatgagttgttaatttgagatggctctgtaactatgaactatagaattatgacttcaaagaaatga |
24599367 |
T |
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| Q |
220 |
tcattattgaacagcaggctccaagatatatgagtacattcat----atttctaatggagaaaattttaaagaagcattt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
24599366 |
tcattattgaacagcaggctccaagatatatgagtacattcatattaatttctaatggagaaaattttaaagcagcattt |
24599287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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