View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_4 (Length: 659)
Name: NF13140_low_4
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 30019067 - 30018741
Alignment:
| Q |
20 |
ttcttacacacagctcttcgttcagttcttccaacttctccaagcttctcaattcagattcctttgccatctcaatctgtgaatttgcagctgcaattct |
119 |
Q |
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| T |
30019067 |
ttcttacacacagctcttcgttcagttcttccaacttctccaagcttctcaattcagattcctttgccatctcaatctgtgaatttgcagctgcaattct |
30018968 |
T |
|
| Q |
120 |
tagattagcttgttcctcagccttttgagttctcttacttagctcatgatattcatctaatgtgagtgtcacaagagatgaagaatcaacttcatttttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018967 |
tagattagcttgttcctcagccttttgagttctcttacttagctcatgatattcatctaatgtgagtgtcacaagagatgaagaatcaacttcatttttg |
30018868 |
T |
|
| Q |
220 |
ttgcttcctcctctagctgattcacttctctccaatgctttgattgaatctttagccaatttttcagaaactttagcagctcctgttattagagataaag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018867 |
ttgcttcctcctctagctgattcacttctctccaatgctttgattgaatctttagccaatttttcagaaactttagcagctcctgttattagagataaag |
30018768 |
T |
|
| Q |
320 |
ttagtcaagaattagagcccatttgtg |
346 |
Q |
| |
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| T |
30018767 |
ttagtcaagaattagagcccatttgtg |
30018741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 414 - 648
Target Start/End: Complemental strand, 30018677 - 30018443
Alignment:
| Q |
414 |
gaatatcaaaataacttttttaccagttttcaataggtgagatatttcagtaatacctatttcattttgtgttgcttgtaatctactttccaatgtagct |
513 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018677 |
gaatatcaaaatcacttttttaccagttttcaataggtgagatatttcagtaatacctatttcattttgtgttgcttgtaatctactttccaatgtagct |
30018578 |
T |
|
| Q |
514 |
aagtttgctttggctttttcagcttcttcttgtgcttcaagaagttgagctttagcagtttgagctagtgatttagcttcatcagcttcttgtgctgctg |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018577 |
aagtttgctttggctttttcagcttcttcttgtgcttcaagaagttgagctttagcagtttgagctagtgatttagcttcatcagcttcttgtgctgctg |
30018478 |
T |
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| Q |
614 |
cttgaagtttcttaggtaactcagccataatctct |
648 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30018477 |
cttgaagtttcttaggtaactcagccataatctct |
30018443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 43697873 - 43697902
Alignment:
| Q |
52 |
aacttctccaagcttctcaattcagattcc |
81 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43697873 |
aacttctccaagcttctcaattcagattcc |
43697902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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