View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13140_low_6 (Length: 507)
Name: NF13140_low_6
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13140_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 37547768 - 37547922
Alignment:
| Q |
19 |
agttggtcctatttgattttatcatatcctccatttggtttgaaagaaataacggaagtgatacaagctaaggaatatgaattgagacaacgacggcaaa |
118 |
Q |
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| T |
37547768 |
agttggtcctatttgattttatcatatcctccatttggtttgaaagaaataacggaagtgatgcaagctaaggaatatgaattgagacaacgacggcaaa |
37547867 |
T |
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| Q |
119 |
caatcaaaggagcataatgacgacatcaaccaaagagcacgtgacaacaacactg |
173 |
Q |
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| T |
37547868 |
caatcaaaggagcataatgacgacatcaaccaaagagcacgtgacaacaacactg |
37547922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 37548035 - 37548116
Alignment:
| Q |
417 |
tatattgtatccctgtctctcttcaaaaggttaaagtttgtatcaatatataannnnnnnnaccaaattttaaaagtattat |
498 |
Q |
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| T |
37548035 |
tatattgtatccctgtctctcttcaaaaggttaaagtttgtatcaatatataattttttttaccaaattttaaaagtattat |
37548116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 37547924 - 37547962
Alignment:
| Q |
296 |
attttcaatgatcatttcaaaaacaagatttaattttta |
334 |
Q |
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| T |
37547924 |
attttcaatgatcatttcaaaaacaagatttaattttta |
37547962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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