View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13140_low_9 (Length: 465)

Name: NF13140_low_9
Description: NF13140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13140_low_9
NF13140_low_9
[»] chr5 (1 HSPs)
chr5 (72-447)||(38377552-38377922)
[»] chr3 (2 HSPs)
chr3 (63-143)||(24272057-24272137)
chr3 (216-304)||(2427778-2427871)
[»] chr7 (1 HSPs)
chr7 (216-305)||(34743059-34743153)
[»] chr4 (2 HSPs)
chr4 (216-304)||(7557456-7557549)
chr4 (216-305)||(15342378-15342472)
[»] chr8 (1 HSPs)
chr8 (216-305)||(28933776-28933870)
[»] chr1 (1 HSPs)
chr1 (216-263)||(22565650-22565702)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 72 - 447
Target Start/End: Original strand, 38377552 - 38377922
Alignment:
Q  72 gaggctcaaacttcggctttggtggcaaaacttttgattcagatgggacagtgtcaacttccattgaagatgttttgttagactgcattatgcaactgta 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38377552 gaggctcaaacttcggctttggtggcaaaacttttgattcagatgggacagtgtcaacttccattgaagatgttttgttagactgcattatgcaactgta 38377651  T
Q  172 caacagcacaaaaatttcatttaaaatataaacaaaacatgtcatttgttttaggttctcaaaggtggtggtcagttactttgtttgggtattgattgac 271  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  38377652 caacagctcgaaaatttgatttaaaatataaacaaaacatgtcatttgttttaggttcttaaaggtggtggtcagttactttatttgggtattgattgac 38377751  T
Q  272 acttgtttatgaatttgtacagtgacagcttgta--nnnnnnnnnnnngggcgacctcttgagcacatcttataccttatactaaaggtgagctgctgcc 369  Q
    || |||||||||||||||||||||||||||||||              ||||||||||||||||||| ||||||||||||| ||||||||| ||||        
T  38377752 acctgtttatgaatttgtacagtgacagcttgtattttttttttttttgggcgacctcttgagcacaccttataccttatattaaaggtgaactgc---- 38377847  T
Q  370 gttgttaatataatccacttttgattcttnnnnnnnntaatttaactctatgaaaaaatctaataaatccccgcttct 447  Q
      |||||||||||| || |||||||||||        ||||||||||||||||||||||||||| |||||||||||||    
T  38377848 --tgttaatataattcatttttgattcttcaaaaaaataatttaactctatgaaaaaatctaat-aatccccgcttct 38377922  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 24272137 - 24272057
Alignment:
Q  63 gaggtttcagaggctcaaacttcggctttggtggcaaaacttttgattcagatgggacagtgtcaacttccattgaagatg 143  Q
    |||||||||||||||||||||| |||||||| ||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  24272137 gaggtttcagaggctcaaactttggctttggaggcaaaactttttgttcagataggacattgtcaacttccattgaagatg 24272057  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 2427778 - 2427871
Alignment:
Q  216 tttgttttaggttctcaaaggtggtggtcag-----ttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgt 304  Q
    |||| ||||||| ||||||||||||||||||     |||||||||||||||||||| ||||||||||||  || |||||||||||||| |||||    
T  2427778 tttgctttaggtactcaaaggtggtggtcagacccgttactttgtttgggtattgactgacacttgtttcagactttgtacagtgacaacttgt 2427871  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 34743059 - 34743153
Alignment:
Q  216 tttgttttaggttctcaaaggtggtggtcag-----ttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgta 305  Q
    ||||| ||||||| |||||||||||||||||     ||||||| ||||||||||||||||||| ||||| ||| |||||||||||||| ||||||    
T  34743059 tttgtcttaggttttcaaaggtggtggtcagacccgttactttatttgggtattgattgacacctgtttctgactttgtacagtgacaacttgta 34743153  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 7557549 - 7557456
Alignment:
Q  216 tttgttttaggttctcaaaggtggtggtcag-----ttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgt 304  Q
    |||| ||||| | ||||||||||||||||||     |||||||||||||||||||| ||||||||||||  || |||||||||||||| |||||    
T  7557549 tttgctttagatactcaaaggtggtggtcagactcgttactttgtttgggtattgactgacacttgtttcagactttgtacagtgacaacttgt 7557456  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 15342472 - 15342378
Alignment:
Q  216 tttgttttaggttctcaaaggtggtggtca-----gttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgta 305  Q
    ||||||||||||||||||||||||||||||     |||| |||||||| |||| || |||||| ||||| ||| |||||||||||| | ||||||    
T  15342472 tttgttttaggttctcaaaggtggtggtcagaactgttattttgtttgagtatcgactgacacctgtttctgactttgtacagtgataacttgta 15342378  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 28933870 - 28933776
Alignment:
Q  216 tttgttttaggttctcaaaggtggtggtca-----gttactttgtttgggtattgattgacacttgtttatgaatttgtacagtgacagcttgta 305  Q
    |||| ||||||| |||||||||||||||||     |||||||||||||| |||| |  ||||||| |||  || ||||||| |||||||||||||    
T  28933870 tttgctttaggtactcaaaggtggtggtcaaatccgttactttgtttggatatttaccgacacttatttcagattttgtactgtgacagcttgta 28933776  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 22565702 - 22565650
Alignment:
Q  216 tttgttttaggttctcaaaggtggtggtca-----gttactttgtttgggtat 263  Q
    |||||||||||||||||||| |||||||||     ||||||||||||||||||    
T  22565702 tttgttttaggttctcaaagatggtggtcagacccgttactttgtttgggtat 22565650  T

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