View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13141_low_1 (Length: 610)

Name: NF13141_low_1
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13141_low_1
NF13141_low_1
[»] chr7 (15 HSPs)
chr7 (219-329)||(6384358-6384471)
chr7 (162-221)||(29286742-29286801)
chr7 (35-119)||(29286805-29286889)
chr7 (286-326)||(29286625-29286665)
chr7 (423-461)||(6384195-6384233)
chr7 (183-221)||(6384487-6384525)
chr7 (161-217)||(7612358-7612414)
chr7 (228-268)||(29275080-29275120)
chr7 (159-217)||(21619306-21619364)
chr7 (270-313)||(29278698-29278743)
chr7 (479-513)||(29286478-29286512)
chr7 (159-217)||(47177535-47177593)
chr7 (159-217)||(47795856-47795914)
chr7 (167-216)||(21568759-21568808)
chr7 (167-216)||(45806608-45806657)
[»] chr4 (4 HSPs)
chr4 (161-217)||(30066881-30066937)
chr4 (66-105)||(7694013-7694052)
chr4 (159-215)||(17751235-17751291)
chr4 (169-217)||(29912838-29912886)
[»] chr5 (8 HSPs)
chr5 (159-222)||(1618986-1619049)
chr5 (159-217)||(39105363-39105421)
chr5 (159-217)||(41819511-41819569)
chr5 (67-120)||(12521541-12521594)
chr5 (67-119)||(28413288-28413340)
chr5 (161-217)||(28776874-28776930)
chr5 (169-217)||(32372513-32372561)
chr5 (179-219)||(40426649-40426689)
[»] chr3 (6 HSPs)
chr3 (167-216)||(5331184-5331233)
chr3 (167-216)||(29520609-29520658)
chr3 (165-217)||(39980618-39980670)
chr3 (159-217)||(30574025-30574083)
chr3 (66-100)||(42745071-42745105)
chr3 (52-100)||(36445858-36445906)
[»] chr8 (7 HSPs)
chr8 (66-101)||(4281578-4281613)
chr8 (66-105)||(42215085-42215124)
chr8 (167-217)||(14956426-14956476)
chr8 (162-220)||(37444531-37444589)
chr8 (66-94)||(779064-779092)
chr8 (67-119)||(28769343-28769395)
chr8 (165-209)||(35749693-35749737)
[»] chr6 (4 HSPs)
chr6 (66-105)||(17241255-17241294)
chr6 (167-217)||(6538406-6538456)
chr6 (66-106)||(6536974-6537014)
chr6 (159-207)||(33736747-33736795)
[»] chr1 (5 HSPs)
chr1 (72-119)||(11893602-11893649)
chr1 (167-217)||(38247342-38247392)
chr1 (66-119)||(10199411-10199464)
chr1 (66-119)||(37593687-37593740)
chr1 (165-217)||(43589537-43589589)
[»] chr2 (5 HSPs)
chr2 (159-216)||(32364837-32364894)
chr2 (159-212)||(39567807-39567860)
chr2 (167-216)||(41407191-41407240)
chr2 (161-217)||(1625800-1625856)
chr2 (161-217)||(19608740-19608796)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 6384471 - 6384358
Alignment:
Q  219 aagccatatttgccatattaaagtagacaactatttgtattagagttttta---agagcttatggaaacaagcttatggcatgtataagctctcaaaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6384471 aagccatatttgccatattaaagtagacaactatttgtattagagtcttttgagagagcttatggaaacaagcttatggcatgtataagctctcaaaaaa 6384372  T
Q  316 tagcttatgcataa 329  Q
    ||||||||||||||    
T  6384371 tagcttatgcataa 6384358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 29286801 - 29286742
Alignment:
Q  162 aataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaatgaag 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  29286801 aataacttatacaaaagtgcttatcataataagtggttacgctgtaggctgcaaatgaag 29286742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 29286889 - 29286805
Alignment:
Q  35 tgtttcaaaggatttatgaaactgtttacgccatgttcataagttgttttcatcttatttacataaactcttaaaaataacttat 119  Q
    |||||||||  ||||| ||||| ||||| | ||||||||| ||||||||||| ||||||||||||| || || ||||||||||||    
T  29286889 tgtttcaaaatatttaagaaacggtttatgacatgttcatcagttgttttcagcttatttacataagcttttcaaaataacttat 29286805  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 29286665 - 29286625
Alignment:
Q  286 agcttatggcatgtataagctctcaaaaaatagcttatgca 326  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  29286665 agcttatggcatgtataacctctcaaaaaatagcttatgca 29286625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 6384233 - 6384195
Alignment:
Q  423 tttatgataatggatgcaataaaccgaaaaataaaaatc 461  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6384233 tttatgataatggatgcaataaacagaaaaataaaaatc 6384195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 6384525 - 6384487
Alignment:
Q  183 tatcataataagtggttatgctataagctgcaaatgaag 221  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6384525 tatcctaataagtggttatgctataagctgcaaatgaag 6384487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 7612414 - 7612358
Alignment:
Q  161 aaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||| |||||||| | | ||||||||| ||||||| ||||||||||||||||||||    
T  7612414 aaatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaat 7612358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 29275120 - 29275080
Alignment:
Q  228 ttgccatattaaagtagacaactatttgtattagagttttt 268  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  29275120 ttgccatattaaagtagacatgtatttgtattagagttttt 29275080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 21619364 - 21619306
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||||| |||| | | ||||||||||||| ||||||| || |||||||||||||||||    
T  21619364 agaaatagcttagagataagtgcttatcatgataagtgcttgtgctataagctgcaaat 21619306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 29278743 - 29278698
Alignment:
Q  270 agagcttatggaaacaagcttatggcatg--tataagctctcaaaa 313  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||    
T  29278743 agagcttatgaaaacaagcttatggcatgtctataagctctcaaaa 29278698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 513
Target Start/End: Complemental strand, 29286512 - 29286478
Alignment:
Q  479 tggagaatgaaaagaagaaggaagaaacctgaatt 513  Q
    ||||||||||||||| |||||||||||||||||||    
T  29286512 tggagaatgaaaagacgaaggaagaaacctgaatt 29286478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 47177593 - 47177535
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||||| |||||||| ||| ||||||||| ||||||| ||||||||||| | ||||||    
T  47177593 agaaataccttatacagaagggcttatcatcataagtgcttatgctataatcagcaaat 47177535  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 47795914 - 47795856
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||||  ||||||| ||||| ||||||| ||||| | ||||||||||||||||||||    
T  47795914 agaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaat 47795856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 21568759 - 21568808
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaa 216  Q
    |||||||| ||||||||||||| |||||   |||||||||||||||||||    
T  21568759 cttatacataagtgcttatcatgataagcacttatgctataagctgcaaa 21568808  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 45806608 - 45806657
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaa 216  Q
    |||||||| |||||||||| || ||||||| || ||||||||||||||||    
T  45806608 cttatacataagtgcttattatgataagtgcttttgctataagctgcaaa 45806657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 30066881 - 30066937
Alignment:
Q  161 aaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||| |||||||| ||||||||||||| ||||| | ||||||||||||||||||||    
T  30066881 aaatagcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaat 30066937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 7694013 - 7694052
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaactct 105  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  7694013 catgttcataagttgttttcagcttatttccataaactct 7694052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 17751235 - 17751291
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaa 215  Q
    ||||||| |||||| | ||| ||||||||| | ||||| ||||||||||||||||||    
T  17751235 agaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgcaa 17751291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 29912886 - 29912838
Alignment:
Q  169 tatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||||||||||||||| || |||| || ||||||||||||| ||||||    
T  29912886 tatacaaaagtgcttattatgataactgcttatgctataagcagcaaat 29912838  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 1619049 - 1618986
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaatgaagc 222  Q
    ||||||| |||||||||||||||||||||| | ||| | ||||||||||||| |||||| ||||    
T  1619049 agaaatagcttatacaaaagtgcttatcatcaaaagcgcttatgctataagcagcaaattaagc 1618986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 39105421 - 39105363
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||||| |||||||| ||| ||||||||| |||||   ||||||||||||||||||||    
T  39105421 agaaatagcttatacataagcgcttatcatgataagcacttatgctataagctgcaaat 39105363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 41819569 - 41819511
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||||| |||||||||||  ||| ||||| ||||||| ||||||||||||||| ||||    
T  41819569 agaaatagcttatacaaaaccgctcatcatgataagtgtttatgctataagctgtaaat 41819511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 12521594 - 12521541
Alignment:
Q  67 atgttcataagttgttttcatcttatttacataaactcttaaaaataacttata 120  Q
    ||||||||||| |||||||| ||||||| ||||| ||||| |||||| ||||||    
T  12521594 atgttcataagctgttttcagcttatttccataagctcttcaaaatagcttata 12521541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 28413288 - 28413340
Alignment:
Q  67 atgttcataagttgttttcatcttatttacataaactcttaaaaataacttat 119  Q
    ||||||||||| |||||||| ||||||| ||||||||||  || |||||||||    
T  28413288 atgttcataagctgttttcagcttatttccataaactctccaagataacttat 28413340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 28776930 - 28776874
Alignment:
Q  161 aaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||| |||||||| |||  |||||||| ||||||| ||| ||||||||||||||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaat 28776874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 32372561 - 32372513
Alignment:
Q  169 tatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||| ||| ||||||||| ||||||| || |||||||||||||||||    
T  32372561 tatacataagggcttatcatgataagtgcttgtgctataagctgcaaat 32372513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 40426689 - 40426649
Alignment:
Q  179 tgcttatcataataagtggttatgctataagctgcaaatga 219  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  40426689 tgcttatcatgataagtgcttgtgctataagctgcaaatga 40426649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 5331233 - 5331184
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaa 216  Q
    |||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  5331233 cttatacataagtgcttattatcataagtgtttatgctataagctgcaaa 5331184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 29520609 - 29520658
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaa 216  Q
    |||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  29520609 cttatacataagtgcttattatgataagtgtttatgctataagctgcaaa 29520658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 39980670 - 39980618
Alignment:
Q  165 aacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||||||| ||||||||||||| ||||||| || | |||||||||||||||    
T  39980670 aacttatacataagtgcttatcatgataagtgtttgtcctataagctgcaaat 39980618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 30574025 - 30574083
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||||| |||||||| ||| ||||||||| |||| || ||||| ||||||||||||||    
T  30574025 agaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaat 30574083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 42745105 - 42745071
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataa 100  Q
    ||||||||||||||||||||||||||||| |||||    
T  42745105 catgttcataagttgttttcatcttatttccataa 42745071  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 36445906 - 36445858
Alignment:
Q  52 gaaactgtttacgccatgttcataagttgttttcatcttatttacataa 100  Q
    ||||||| ||| | ||||||||| ||||||||||||||||||| |||||    
T  36445906 gaaactgcttatgacatgttcattagttgttttcatcttattttcataa 36445858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 4281613 - 4281578
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaa 101  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4281613 catgttcataagttgttttcatcttattttcataaa 4281578  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 42215085 - 42215124
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaactct 105  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  42215085 catgttcataagttgttttcagcttatttacataagctct 42215124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 14956426 - 14956476
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||||| ||||||||||||| ||||| | || |||||||||||||||||    
T  14956426 cttatacataagtgcttatcatgataagcgattgtgctataagctgcaaat 14956476  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 37444531 - 37444589
Alignment:
Q  162 aataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaatgaa 220  Q
    |||| |||||||| ||| ||||||||| ||||||| ||||||| ||| |||||||||||    
T  37444531 aatagcttatacataagcgcttatcatgataagtgcttatgctttaacctgcaaatgaa 37444589  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 779064 - 779092
Alignment:
Q  66 catgttcataagttgttttcatcttattt 94  Q
    |||||||||||||||||||||||||||||    
T  779064 catgttcataagttgttttcatcttattt 779092  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 28769343 - 28769395
Alignment:
Q  67 atgttcataagttgttttcatcttatttacataaactcttaaaaataacttat 119  Q
    |||| ||||||||||||||| ||||||| ||||||||||  |||||| |||||    
T  28769343 atgtccataagttgttttcagcttatttccataaactctccaaaatagcttat 28769395  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 35749693 - 35749737
Alignment:
Q  165 aacttatacaaaagtgcttatcataataagtggttatgctataag 209  Q
    ||||||||||||| ||||||| || ||||||| ||||||||||||    
T  35749693 aacttatacaaaaatgcttattatgataagtgtttatgctataag 35749737  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 17241255 - 17241294
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaactct 105  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  17241255 catgttcataagttgttttcaacttatttccataaactct 17241294  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 6538456 - 6538406
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||||| ||| ||||||||| ||||||| || |||||||||||||||||    
T  6538456 cttatacataagcgcttatcattataagtgcttgtgctataagctgcaaat 6538406  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 6537014 - 6536974
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaactctt 106  Q
    ||||||||||||||||||||| ||||||| ||||| |||||    
T  6537014 catgttcataagttgttttcagcttatttccataagctctt 6536974  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 33736795 - 33736747
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctata 207  Q
    |||||||||||||||| ||||||| ||||| |||||||  |||||||||    
T  33736795 agaaataacttatacataagtgctgatcatgataagtgcctatgctata 33736747  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 11893602 - 11893649
Alignment:
Q  72 cataagttgttttcatcttatttacataaactcttaaaaataacttat 119  Q
    ||||||||||||||| ||||||| ||||||||||| |||||| |||||    
T  11893602 cataagttgttttcagcttatttccataaactcttcaaaatagcttat 11893649  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 38247392 - 38247342
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||||| |||||| |||||| ||||||| || |||||||||||||||||    
T  38247392 cttatacataagtgcatatcatgataagtgcttgtgctataagctgcaaat 38247342  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 10199411 - 10199464
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaactcttaaaaataacttat 119  Q
    ||||||||||||||||||||| ||||||| ||||| ||||  |||||| |||||    
T  10199411 catgttcataagttgttttcagcttattttcataagctctctaaaatagcttat 10199464  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 37593687 - 37593740
Alignment:
Q  66 catgttcataagttgttttcatcttatttacataaactcttaaaaataacttat 119  Q
    |||||||||||| |||||||| ||||||| ||||| ||||| |||||| |||||    
T  37593687 catgttcataagctgttttcagcttattttcataagctcttcaaaatagcttat 37593740  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 43589537 - 43589589
Alignment:
Q  165 aacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    |||||||||| ||||||||||||||||||  | ||||||||||| ||| ||||    
T  43589537 aacttatacataagtgcttatcataataaaggcttatgctataaactgtaaat 43589589  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 32364837 - 32364894
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaa 216  Q
    ||||||| |||||||| ||||||||||||| ||||||  | |||||||||||| ||||    
T  32364837 agaaatagcttatacataagtgcttatcatgataagttctcatgctataagctacaaa 32364894  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 39567860 - 39567807
Alignment:
Q  159 agaaataacttatacaaaagtgcttatcataataagtggttatgctataagctg 212  Q
    ||||||| |||||||| ||||||||||||| ||||| | |||||| ||||||||    
T  39567860 agaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataagctg 39567807  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 41407240 - 41407191
Alignment:
Q  167 cttatacaaaagtgcttatcataataagtggttatgctataagctgcaaa 216  Q
    |||||||| ||||||||||||| ||||| | || ||||||||||||||||    
T  41407240 cttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaa 41407191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 1625856 - 1625800
Alignment:
Q  161 aaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||| |||||||  |||||||||||||||||||||  | | |||||||||||||||    
T  1625856 aaatagcttatacttaagtgcttatcataataagtgtgtgtactataagctgcaaat 1625800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 19608740 - 19608796
Alignment:
Q  161 aaataacttatacaaaagtgcttatcataataagtggttatgctataagctgcaaat 217  Q
    ||||| |||||||| |||||||||||||  || ||| || |||||||||||||||||    
T  19608740 aaatagcttatacataagtgcttatcatggtatgtgcttgtgctataagctgcaaat 19608796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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