View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13141_low_2 (Length: 504)
Name: NF13141_low_2
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13141_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 88 - 446
Target Start/End: Complemental strand, 30083884 - 30083530
Alignment:
| Q |
88 |
caacataagcaaacccaatccatttcattataaataatatcagcaatacaagattgtataattaacacacacaaaaaatagtgaagtctaatttgtggcc |
187 |
Q |
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| T |
30083884 |
caacataagcaaacccaatccatttcattataaataatatcagcaatacaagattgtatagttaacacacacaaaaaataatgaagcctaatttgtggcc |
30083785 |
T |
|
| Q |
188 |
gcggtagctaaagtatgagcaaccacgtttatttttcacctcnnnnnnntaatcaaagaatttgaaatactaaggaagtcgctgcatttgtctattacaa |
287 |
Q |
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| T |
30083784 |
gcagtag------tatgagcaaccacgtttatttttcacctcaaaaaaataatcaaagaatttgaaatagtaaggaagtcgctgcatttgtctattacaa |
30083691 |
T |
|
| Q |
288 |
acaagttaagatatatcttctctaagttgtttatgcatcaacaacaattttagagtagagttccaaaataagatttgaatgtcaggatctaaacatatat |
387 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30083690 |
acaagttaagatatatcttctctatgttgtttatgcatcaacaacaattttagagtagagttccaaaataagatttgaatgtcaggatctaaacatatat |
30083591 |
T |
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| Q |
388 |
aacaaatgtaacatcccgcatttccctttaatgaataa--taaaatagctaggatcttcta |
446 |
Q |
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| T |
30083590 |
aacaaatgtaacatcccgcatttccctttaatgaataatttaaaatagctaggatcttcta |
30083530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 30117425 - 30117377
Alignment:
| Q |
446 |
aacggacactcaaatggctggaacaaaagtttcaagccagagttctctg |
494 |
Q |
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| T |
30117425 |
aacggacactcaaatggctggaacaaaagttccaagccagagttctctg |
30117377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 30126985 - 30126937
Alignment:
| Q |
446 |
aacggacactcaaatggctggaacaaaagtttcaagccagagttctctg |
494 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30126985 |
aacggacactcaaatggctggaacaaaagttccaagccagagttctctg |
30126937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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